Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 8.5e-272 940.3 682 100.0
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 8.3e-219 764.2 669 87.7
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 4.6e-201 705.3 662 84.6
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 2.4e-189 666.4 635 85.0
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 4.9e-187 658.7 641 84.2
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 3.4e-172 609.4 661 75.8
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 1.5e-164 583.9 656 77.1
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 3.1e-157 559.7 663 74.1
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 3.5e-156 556.2 661 72.2
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.3e-155 554.3 602 78.2
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 2.1e-153 547.0 668 70.2
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 2.7e-153 546.6 657 71.5
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 8.0e-153 545.0 603 77.1
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 1.4e-152 544.3 696 56.6
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 7.4e-151 538.5 663 70.1
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 7.4e-151 538.5 658 74.3
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 4.5e-148 529.3 600 74.8
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.0e-147 528.1 594 76.8
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 2.2e-147 526.9 602 76.6
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 6.5e-147 525.4 592 77.4
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.2e-145 521.2 560 82.1
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.3e-142 511.1 664 70.2
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.3e-139 501.1 598 74.4
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 2.7e-137 493.4 666 67.4
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 4.7e-137 492.7 663 67.6
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 1.8e-136 490.7 636 70.8
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 1.8e-136 490.7 640 70.5
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 6.8e-136 488.8 612 69.3
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 1.5e-135 487.6 651 68.5
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.4e-135 486.5 614 68.9
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 7.5e-135 485.3 614 70.5
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 1.3e-134 484.6 613 70.8
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.7e-134 484.2 617 68.4
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 1.7e-134 484.2 667 67.9
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 6.3e-134 482.3 597 73.2
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 8.3e-134 481.9 666 66.5
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 1.8e-133 480.7 644 69.1
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.2e-132 478.0 596 70.1
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 2.0e-132 477.2 596 71.8
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.3e-131 474.6 660 69.4
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 2.9e-131 473.4 613 70.3
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 6.6e-131 472.2 647 67.4
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 4.2e-130 469.5 634 68.0
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 9.5e-130 468.4 532 78.6
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 1.0e-128 464.9 668 66.2
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 1.2e-127 461.5 588 74.1
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 2.0e-127 460.7 532 78.6
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 2.2e-126 457.2 661 59.9
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 6.3e-126 455.7 612 69.1
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 7.0e-125 452.2 590 70.8
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 1.3e-123 448.0 663 66.2
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 4.0e-120 436.4 593 70.3
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 4.4e-119 433.0 682 67.0
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 5.8e-119 432.6 661 66.9
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 8.3e-118 428.7 588 70.7
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 1.6e-116 424.5 578 71.5
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.0e-115 421.8 584 69.2
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 1.1e-112 411.8 536 74.3
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 2.9e-110 403.7 664 63.4
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 3.2e-109 400.2 585 70.6
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 5.4e-109 399.4 574 70.2
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.9e-106 391.0 529 74.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.6e-105 387.9 594 66.0
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 2.1e-105 387.5 639 66.4
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 2.8e-105 387.1 639 66.4
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 3.4e-103 380.2 581 61.8
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 3.7e-102 376.7 610 64.6
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 6.4e-102 375.9 594 65.5
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 2.1e-100 370.9 565 70.6
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 4.6e-100 369.8 588 68.2
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 7.8e-100 369.0 271 79.0
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 9.6e-98 362.1 213 83.6
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 7.6e-95 352.4 210 80.5
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 9.3e-93 345.5 218 77.1
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 3.9e-91 340.1 586 66.7
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 4.3e-90 336.7 562 43.8
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 1.3e-89 335.1 723 58.2
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 4.8e-89 333.2 653 61.6
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 5.1e-83 313.2 218 69.3
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 5.1e-83 313.2 588 63.9
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 3.6e-81 307.0 445 72.1
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 9.0e-80 302.4 585 62.4
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.6e-76 290.0 227 64.8
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 8.7e-75 285.8 199 69.3
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.1e-72 277.3 534 66.1
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 4.5e-63 246.9 176 69.3
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 1.9e-61 241.5 488 69.1
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 6.7e-59 233.0 217 50.7
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.1e-56 223.8 226 61.9
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 2.9e-54 217.6 265 55.1
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 1.4e-40 172.2 152 69.1
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 1.4e-40 172.2 288 45.1
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 1.9e-37 161.8 128 63.3
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.6e-36 158.7 155 64.5
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 3.3e-34 151.0 124 63.7
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 7.5e-34 149.8 156 54.5
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 2.6e-26 124.8 125 63.2
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 5.7e-18 97.1 73 64.4
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 1.3e-17 95.9 126 37.3
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 1.1e-13 82.8 225 24.0
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.1e-13 82.8 203 24.6
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 1.1e-13 82.8 211 22.7
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 1.9e-13 82.0 209 23.4
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 7.3e-13 80.1 203 24.1
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 1.6e-12 79.0 259 22.8
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 4.7e-12 77.4 233 23.2
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 4.7e-12 77.4 203 22.2
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.0e-11 76.3 272 21.3
CDE05G3586 Ceratophyllum demersum HOM05D000602 ORTHO05D009029 1.4e-11 75.9 83 45.8
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 1.4e-11 75.9 199 23.1
Peaxi162Scf01124g10012 Petunia axillaris HOM05D003056 ORTHO05D003422 1.4e-11 75.9 210 25.2
PGSC0003DMG400004093 Solanum tuberosum HOM05D003056 ORTHO05D003422 1.4e-11 75.9 276 23.2
Sopen07g006580 Solanum pennellii HOM05D003056 ORTHO05D003422 2.3e-11 75.1 276 22.8
CSS0049173 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 3.0e-11 74.7 186 23.7
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 3.0e-11 74.7 41 78.0
Solyc07g017760.1 Solanum lycopersicum HOM05D003056 ORTHO05D003422 3.0e-11 74.7 276 22.8
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 5.2e-11 73.9 208 24.5
Duzib150G0731 Durio zibethinus HOM05D003056 ORTHO05D003422 6.8e-11 73.6 224 22.3
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 6.8e-11 73.6 186 23.7
Sc05g0000680 Simmondsia chinensis HOM05D003056 ORTHO05D003422 8.9e-11 73.2 187 23.0
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 1.5e-10 72.4 75 42.7
DCAR_020128 Daucus carota HOM05D003056 ORTHO05D003422 2.6e-10 71.6 206 21.8
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 5.7e-10 70.5 196 22.4
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 9.8e-10 69.7 214 23.4
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 1.7e-09 68.9 166 24.7
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 2.9e-09 68.2 296 21.6
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 3.7e-09 67.8 123 31.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 8.3e-09 66.6 115 33.0
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 8.3e-09 66.6 167 27.5
vmacro16033 Vaccinium macrocarpon HOM05D003056 ORTHO05D003422 1.4e-08 65.9 198 22.2
Manes.14G156601 Manihot esculenta HOM05D003056 ORTHO05D003422 1.8e-08 65.5 177 22.6
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 3.2e-08 64.7 166 25.9
HanXRQChr07g0202171 Helianthus annuus HOM05D003056 ORTHO05D003422 3.2e-08 64.7 211 25.6
Mapoly0029s0090 Marchantia polymorpha HOM05D005862 ORTHO05D021269 7.0e-08 63.5 231 24.7
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 2.0e-07 62.0 168 24.4
Cpa.g.sc95.42 Carica papaya HOM05D003056 ORTHO05D003422 2.7e-07 61.6 173 24.9
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 4.6e-07 60.8 131 45.0
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 4.6e-07 60.8 100 26.0
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 4.6e-07 60.8 127 29.1
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 4.6e-07 60.8 145 20.0
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 7.8e-07 60.1 131 42.7
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 7.8e-07 60.1 107 32.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 7.8e-07 60.1 49 59.2
SMO340G0285 Selaginella moellendorffii HOM05D002785 ORTHO05D000003 1.0e-06 59.7 150 24.0
CiPaw.11G159300 Carya illinoinensis HOM05D002453 ORTHO05D008746 1.3e-06 59.3 157 28.7
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.7e-06 58.9 116 29.3
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 2.3e-06 58.5 164 25.6
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 2.3e-06 58.5 162 25.9
Potri.015G018700 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.3e-06 58.5 192 23.4
Potri.017G036400 Populus trichocarpa HOM05D005862 ORTHO05D007731 2.3e-06 58.5 156 38.5
Ah.06g184240 Amaranthus hybridus HOM05D006354 ORTHO05D007773 3.0e-06 58.2 200 22.0
Actinidia01299 Actinidia chinensis HOM05D003056 ORTHO05D003422 3.9e-06 57.8 170 25.9
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 3.9e-06 57.8 132 30.3
Sabra15G0014200 Salix brachista HOM05D000001 ORTHO05D000003 3.9e-06 57.8 191 23.6
ATR0180G025 Amborella trichopoda HOM05D042338 ORTHO05D031092 5.0e-06 57.4 117 29.1
CBR_g23539 Chara braunii HOM05D003056 ORTHO05D003422 5.0e-06 57.4 210 20.5
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 6.6e-06 57.0 179 25.1
AUR62009573 Chenopodium quinoa HOM05D006354 ORTHO05D007773 6.6e-06 57.0 190 22.6
MELO3C010518.2 Cucumis melo HOM05D000104 ORTHO05D009920 6.6e-06 57.0 132 30.3
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 6.6e-06 57.0 141 26.2
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 6.6e-06 57.0 94 36.2
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 6.6e-06 57.0 120 33.3
CSS0035408 Camellia sinensis var. sinensis HOM05D007251 ORTHO05D009266 8.6e-06 56.6 128 31.2
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 8.6e-06 56.6 212 24.5
GSVIVG01035759001 Vitis vinifera HOM05D000001 ORTHO05D010146 8.6e-06 56.6 191 26.7


User provided reference genes

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