Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.7e-188 661.4 334 100.0
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.4e-171 604.4 336 93.5
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.3e-152 542.0 346 80.9
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-142 510.0 342 77.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-141 506.5 334 78.4
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-139 500.4 342 76.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.3e-137 492.7 336 75.0
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.3e-137 492.7 344 74.7
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.0e-137 492.3 332 76.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.9e-137 491.9 334 75.7
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.5e-136 489.2 341 74.5
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 7.4e-136 487.6 342 74.6
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.6e-136 487.3 344 74.1
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 6.9e-134 481.1 330 73.0
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.5e-133 478.4 281 80.4
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.0e-132 477.2 332 76.8
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.7e-132 476.5 336 72.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 8.4e-132 474.2 335 70.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.1e-131 473.8 343 72.3
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.2e-131 472.2 278 80.6
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 7.2e-131 471.1 279 79.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 9.3e-131 470.7 281 81.5
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 9.3e-131 470.7 281 81.5
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 9.3e-131 470.7 333 70.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.6e-130 469.9 331 72.5
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.1e-130 469.5 281 81.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.1e-130 469.5 281 81.5
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.6e-130 468.4 328 72.0
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.8e-129 466.5 330 72.7
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.8e-129 466.5 290 76.9
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 6.7e-129 464.5 290 76.6
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 8.7e-129 464.2 279 79.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.5e-128 463.4 303 74.3
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 3.3e-128 462.2 319 74.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 5.7e-128 461.5 280 79.3
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 5.7e-128 461.5 329 72.0
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.3e-127 460.3 253 89.3
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.2e-127 459.5 313 72.5
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.2e-127 459.5 327 70.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 2.2e-127 459.5 326 70.6
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.4e-126 456.1 337 69.7
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.1e-126 455.7 328 71.0
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.9e-126 454.5 342 72.5
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.0e-126 454.1 332 69.3
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.5e-125 453.4 331 69.8
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 2.0e-125 453.0 334 68.9
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 1.3e-124 450.3 331 70.7
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.3e-124 450.3 339 70.5
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.3e-124 450.3 324 71.6
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.5e-123 446.0 324 71.0
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 5.5e-123 444.9 336 68.8
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.6e-122 443.4 312 70.2
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.1e-122 443.0 302 71.9
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.1e-122 441.4 332 70.8
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 6.1e-122 441.4 332 69.9
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.3e-121 439.5 290 73.1
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 5.1e-121 438.3 346 68.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.7e-121 438.0 335 68.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.7e-119 433.3 336 69.0
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 3.7e-119 432.2 319 70.5
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.8e-119 431.8 340 66.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 8.2e-119 431.0 323 69.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.8e-118 429.9 341 67.7
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 2.4e-118 429.5 308 73.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.1e-118 429.1 277 73.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.2e-117 427.2 315 69.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.5e-117 426.8 261 78.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.4e-117 425.6 297 70.4
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 5.9e-117 424.9 330 68.2
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.3e-116 423.7 282 71.3
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 4.2e-115 418.7 348 64.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.7e-114 415.2 222 87.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 7.9e-114 414.5 225 85.3
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 8.8e-113 411.0 281 73.7
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.6e-112 409.5 309 69.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.7e-111 406.8 248 77.4
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.7e-111 406.8 278 70.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 3.7e-111 405.6 326 66.6
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 4.5e-109 398.7 334 65.9
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 2.9e-108 396.0 346 61.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 6.5e-108 394.8 315 65.7
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.9e-107 393.3 344 61.6
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 5.7e-104 381.7 332 61.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-102 377.5 332 63.6
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 5.3e-102 375.2 342 60.2
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.8e-100 369.0 206 84.0
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 6.8e-97 358.2 307 63.5
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 7.5e-96 354.8 212 79.7
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.5e-93 345.5 227 70.9
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.5e-93 345.5 227 70.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 7.7e-93 344.7 212 78.3
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.3e-92 344.0 257 64.2
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.8e-92 342.4 351 54.7
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.2e-91 339.3 313 59.4
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.6e-90 337.0 312 58.7
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.6e-85 320.5 492 41.9
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.6e-84 315.1 264 64.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.8e-81 305.1 220 62.3
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-78 297.0 264 60.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.4e-73 280.8 334 53.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.4e-73 280.8 266 50.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.2e-72 277.7 167 77.8
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.6e-69 267.3 225 67.6
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.5e-69 266.2 280 48.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-67 260.8 220 59.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-64 250.0 213 61.5
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.9e-63 246.5 144 79.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 5.1e-60 235.7 195 67.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.9e-59 233.8 205 53.2
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 2.3e-57 226.9 207 61.8
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.2e-55 220.3 247 51.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.0e-49 199.5 162 64.8
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.2e-39 167.2 96 80.2
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.7e-37 160.2 109 71.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.0e-32 144.1 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.3e-30 135.2 155 50.3
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 8.7e-28 128.6 62 93.5
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.4e-22 111.3 137 48.2
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.9e-21 105.5 105 52.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.1e-12 76.3 43 81.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.2e-10 68.9 68 57.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.2e-10 68.9 68 57.4
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.7e-07 61.2 60 55.0
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-06 58.5 181 34.8


User provided reference genes

Program Settings