Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 3526.5 1929 100.0
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2999.1 1881 87.3
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2976.0 1950 85.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2907.9 1925 83.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2862.8 1900 82.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2847.0 1901 82.3
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2845.1 1901 82.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2670.2 1950 77.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2669.0 1941 76.4
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2654.4 1940 75.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2652.5 1959 76.2
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2645.9 1933 75.8
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2644.4 1914 76.7
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2639.0 1946 76.6
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2567.0 1940 74.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2566.6 1862 75.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2564.6 1908 75.3
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2546.5 1905 75.7
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2539.6 1927 73.9
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2526.9 1937 73.5
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2525.4 1794 75.3
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2518.0 1905 74.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2514.6 1919 73.5
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2510.7 1930 72.4
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2508.4 1929 72.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2504.9 1858 74.3
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2504.2 1927 73.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2493.0 1961 71.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2491.1 1942 72.0
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2479.5 1836 72.8
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2478.4 1936 72.5
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2476.4 1944 72.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2467.6 1937 73.2
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2463.7 1775 74.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2460.3 1855 74.6
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2451.0 1821 72.9
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2444.8 2040 68.9
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2444.5 1951 70.8
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2442.5 1975 70.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2424.4 1914 71.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2411.7 1919 70.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2407.5 1925 70.4
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2394.0 1922 69.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2389.0 1922 70.6
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2385.9 1935 68.7
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2372.8 1930 70.0
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2372.8 1823 70.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2364.0 1915 69.8
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2361.6 1911 70.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2354.3 1796 70.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2342.4 1904 70.2
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2337.4 1813 70.2
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2330.1 1942 68.9
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2326.2 1901 69.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2316.6 1792 70.4
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2308.9 1934 69.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2284.2 1862 70.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2283.4 1925 66.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2265.3 1931 66.8
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2258.4 1921 66.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2256.5 1938 66.2
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2254.6 1920 66.9
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2254.2 1913 67.3
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2249.6 1785 69.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2245.7 1820 68.4
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2245.3 1909 66.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2239.5 1919 66.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2235.3 1910 67.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2222.6 1941 66.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2206.0 1951 64.5
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2198.7 1905 66.9
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2186.0 1822 66.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2154.4 1892 65.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2140.5 1892 66.5
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2139.4 1791 64.9
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2135.1 1823 65.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2132.8 1674 69.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1802 64.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2119.7 1792 65.2
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2108.2 1840 64.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2098.6 1873 63.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2094.3 1973 63.0
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2090.1 1902 63.4
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2024.2 1859 62.0
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 2022.7 1680 67.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 2018.0 1892 62.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1983.0 1835 60.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1982.2 1838 60.3
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1978.0 1834 60.4
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1971.1 1835 60.3
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1963.7 1836 60.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1962.6 1870 58.8
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1944.5 1833 60.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1943.7 1831 59.6
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1943.7 1838 59.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1941.0 1835 59.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1939.9 1821 59.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1934.5 1834 59.7
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1921.4 1842 58.6
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1920.6 1854 58.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1918.7 1837 58.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1914.8 1856 58.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1912.9 1856 58.3
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1912.9 1856 58.3
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1818.5 1879 57.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1694.1 1939 53.1
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1652.1 1240 71.6
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1646.7 1925 53.6
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1637.1 1831 51.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1625.5 1233 73.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1605.1 1484 63.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1523.1 1435 61.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1519.6 1944 48.4
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1510.4 1225 68.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1505.3 1900 48.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1505.3 1900 48.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1500.0 1832 51.2
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1489.9 1859 50.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1404.8 1469 56.5
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1297.3 1084 69.6
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1282.3 1771 45.3
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1271.9 922 73.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1240.7 1342 57.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1143.6 1042 65.5
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 8.4e-309 1064.7 863 69.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 8.5e-301 1038.1 1413 49.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.8e-288 995.7 842 68.6
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 4.1e-287 992.6 1625 40.2
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.6e-278 964.1 1791 38.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-262 911.4 786 65.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.8e-250 870.9 915 56.9
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.4e-204 716.1 619 68.3
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.3e-200 705.3 724 55.9
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.8e-189 668.3 656 56.6
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.1e-186 657.1 653 55.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 5.5e-183 646.7 498 68.1
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.0e-181 642.5 484 76.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.4e-170 604.7 624 56.6
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-164 584.3 452 73.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.0e-145 521.9 530 61.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.6e-137 495.7 530 60.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 5.8e-124 450.7 422 60.4
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.7e-113 415.2 1253 28.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.5e-89 335.1 856 34.1
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 6.0e-89 334.3 448 47.5
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.4e-85 323.2 633 36.2
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.3e-80 306.6 2085 23.4
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.8e-77 296.2 470 39.8
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.0e-72 278.9 392 42.9
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 6.5e-67 261.2 274 71.2
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.2e-66 258.8 226 68.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.2e-58 232.3 199 68.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.1e-57 229.6 275 49.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.1e-45 189.1 234 56.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.5e-42 179.5 190 77.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.9e-36 158.3 207 51.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.6e-20 105.5 68 73.5
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-18 100.9 149 42.3
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.6e-17 97.1 97 52.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.6e-17 97.1 63 76.2
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 2.7e-12 79.7 132 72.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.5e-12 79.3 52 63.5
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 7.8e-12 78.2 59 66.1
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 6.6e-11 75.1 44 79.5
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 4.7e-09 68.9 46 71.7
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.1e-08 67.8 33 84.8
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 6.8e-08 65.1 43 72.1
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 8.9e-08 64.7 52 55.8
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.4e-07 62.4 40 70.0
PGSC0003DMG401029595 Solanum tuberosum HOM05D002037 ORTHO05D021575 4.9e-06 58.9 43 60.5
Hma1.2p1_0214F.1_g090630 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.4e-06 58.5 40 67.5


User provided reference genes

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