Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 2.0e-223 778.9 415 100.0
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.9e-202 709.1 412 91.5
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.1e-201 705.7 415 85.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 3.8e-190 668.3 413 87.9
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.0e-183 646.0 417 85.1
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.9e-182 642.1 417 84.7
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.6e-180 635.2 444 80.6
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.3e-174 616.7 415 81.9
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 5.0e-174 614.8 415 76.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 5.0e-174 614.8 410 78.0
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.4e-173 613.2 414 75.8
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.5e-173 612.5 403 77.7
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 9.4e-173 610.5 410 81.2
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.6e-172 609.8 411 75.4
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 2.7e-172 609.0 371 82.5
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 4.7e-172 608.2 406 77.3
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.1e-172 607.8 426 75.4
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.0e-171 607.1 426 75.1
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.8e-171 606.3 417 75.8
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 2.3e-171 605.9 376 86.4
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.0e-171 605.5 410 80.5
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.5e-170 603.2 410 76.8
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 2.6e-170 602.4 393 77.1
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 3.3e-170 602.1 392 77.3
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 9.7e-170 600.5 427 74.7
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 9.7e-170 600.5 419 73.7
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 9.7e-170 600.5 371 81.7
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.8e-169 599.0 413 74.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 2.8e-169 599.0 357 83.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.8e-169 598.2 407 74.9
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 6.3e-169 597.8 420 73.8
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 8.2e-169 597.4 364 81.9
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.1e-168 597.0 393 77.4
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.1e-168 597.0 361 82.0
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.8e-168 596.3 410 80.5
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.4e-168 595.9 426 73.5
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 4.1e-168 595.1 428 73.6
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 4.1e-168 595.1 434 72.6
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 4.1e-168 595.1 357 82.4
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 4.1e-168 595.1 422 78.4
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 9.1e-168 594.0 414 79.0
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.6e-167 592.4 434 72.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 4.5e-167 591.7 397 79.6
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 7.7e-167 590.9 378 82.8
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.0e-166 590.5 410 77.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.0e-166 590.5 367 83.7
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.0e-166 590.5 359 81.1
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.7e-166 589.7 357 81.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 6.5e-166 587.8 426 72.5
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 6.5e-166 587.8 377 78.5
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 6.5e-166 587.8 356 81.2
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.5e-165 586.6 395 76.5
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 3.2e-165 585.5 448 69.6
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.2e-165 584.3 356 86.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 9.4e-165 583.9 397 80.4
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.2e-164 583.6 419 75.4
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.1e-164 582.8 431 72.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.1e-164 582.8 357 81.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 8.0e-164 580.9 362 80.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.0e-163 580.5 411 72.5
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.0e-163 580.5 386 75.6
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.8e-163 579.7 365 79.5
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 3.0e-163 578.9 371 82.5
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 3.0e-163 578.9 361 79.2
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.0e-163 578.6 357 78.4
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 4.0e-163 578.6 443 69.1
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 6.7e-163 577.8 414 72.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 8.8e-163 577.4 404 73.3
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.5e-162 576.6 391 74.4
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.6e-162 575.9 358 78.2
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.6e-162 575.9 358 83.2
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 7.5e-162 574.3 358 77.9
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 7.5e-162 574.3 358 77.9
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 7.5e-162 574.3 358 77.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 7.5e-162 574.3 358 83.2
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 9.7e-162 573.9 357 78.7
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 9.7e-162 573.9 371 77.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.7e-161 573.2 357 78.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 2.2e-161 572.8 379 76.3
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.8e-161 572.4 366 83.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.8e-161 572.4 405 77.3
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 3.7e-161 572.0 390 76.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 8.2e-161 570.9 415 74.5
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 8.2e-161 570.9 418 71.1
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-159 567.0 326 89.9
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-159 567.0 326 89.9
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.6e-159 566.6 376 76.9
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 3.5e-159 565.5 399 72.2
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.2e-158 562.8 370 75.7
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 7.2e-157 557.8 393 73.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.6e-156 555.4 377 78.0
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 8.8e-155 550.8 374 74.9
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.4e-154 548.9 338 83.4
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 1.4e-152 543.5 502 59.4
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 4.1e-152 542.0 365 79.2
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 7.0e-152 541.2 341 78.6
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 8.5e-150 534.3 414 68.6
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.1e-148 529.6 337 78.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 3.4e-146 522.3 495 62.2
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 3.4e-146 522.3 402 66.9
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 6.3e-145 518.1 372 75.5
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 7.0e-144 514.6 540 58.1
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.5e-143 512.3 389 69.7
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.5e-143 512.3 368 75.0
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.6e-141 505.0 410 71.2
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.2e-138 497.3 567 54.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.3e-137 493.8 370 66.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.6e-132 476.9 444 66.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 2.8e-132 476.1 504 57.7
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.3e-118 430.6 382 61.8
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.5e-114 417.2 346 66.2
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 5.6e-109 398.7 203 93.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 7.3e-109 398.3 371 59.3
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.5e-106 390.6 381 58.5
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.6e-98 363.2 209 84.7
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 1.9e-77 293.9 308 55.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.4e-59 234.6 407 41.3
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 2.4e-59 233.8 114 95.6
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-49 201.4 181 60.8
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 9.7e-45 185.3 122 75.4
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-44 184.9 111 82.9
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.2e-41 174.1 211 50.7
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.8e-31 140.6 69 89.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.2e-28 131.0 85 75.3
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.7e-28 130.2 73 89.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 3.1e-27 127.1 84 73.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.7e-20 103.6 53 86.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.0e-17 95.5 103 51.5
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.6e-15 88.2 43 90.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.3e-12 78.6 62 62.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 9.2e-11 72.4 43 79.1
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 2.0e-10 71.2 61 60.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 2.7e-10 70.9 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 4.6e-10 70.1 38 78.9
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 6.6e-09 66.2 46 65.2


User provided reference genes

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