Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.9e-231 805.4 406 100.0
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 3.4e-183 645.2 392 81.6
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.7e-182 641.7 392 81.6
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.9e-179 632.1 390 80.0
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 8.3e-166 587.4 390 75.6
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.4e-157 560.1 436 64.9
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 7.1e-157 557.8 437 65.9
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 1.1e-154 550.4 428 65.0
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.8e-153 545.8 437 64.5
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 3.6e-153 545.4 434 63.8
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 6.2e-153 544.7 420 67.1
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 8.1e-153 544.3 432 65.5
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.1e-152 543.9 415 66.5
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 3.1e-152 542.3 429 66.4
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 6.8e-152 541.2 437 65.2
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.5e-151 540.0 439 63.8
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 2.0e-151 539.7 420 66.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.0e-151 539.7 426 65.5
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.6e-151 539.3 413 67.6
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 2.6e-151 539.3 420 66.4
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.6e-151 539.3 426 65.5
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.4e-151 538.9 419 66.3
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 4.4e-151 538.5 420 66.0
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 7.6e-151 537.7 414 66.9
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 3.2e-149 532.3 419 65.2
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 4.1e-149 531.9 439 63.6
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.6e-148 530.0 427 62.5
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.6e-148 530.0 415 65.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 2.1e-148 529.6 415 66.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.7e-148 529.3 424 63.4
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 3.5e-148 528.9 440 62.5
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.5e-148 528.9 440 63.6
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 4.6e-148 528.5 432 64.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 6.0e-148 528.1 419 64.2
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 1.0e-147 527.3 429 64.1
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.0e-147 527.3 426 62.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.3e-147 526.9 426 62.9
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 3.9e-147 525.4 426 62.7
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.9e-147 525.4 422 64.9
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 5.1e-147 525.0 422 64.7
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 6.6e-147 524.6 416 62.5
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 8.7e-147 524.2 427 63.7
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.9e-146 523.1 332 79.8
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.9e-146 523.1 441 60.3
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 5.6e-146 521.5 441 60.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 9.6e-146 520.8 425 62.6
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.6e-145 520.0 430 62.6
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.1e-145 519.6 415 66.0
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 2.8e-145 519.2 415 65.8
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 2.8e-145 519.2 415 65.8
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 2.8e-145 519.2 430 63.7
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 4.7e-145 518.5 422 63.3
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.7e-145 518.5 423 64.1
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 6.2e-145 518.1 420 65.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 8.1e-145 517.7 439 62.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.4e-144 516.2 429 61.5
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.0e-144 515.4 332 78.6
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 5.2e-144 515.0 395 67.6
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 5.2e-144 515.0 429 61.5
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 9.0e-144 514.2 458 59.2
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.0e-143 513.1 434 60.6
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 2.6e-143 512.7 403 64.0
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 2.2e-142 509.6 399 65.7
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 4.9e-142 508.4 394 66.8
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 6.4e-142 508.1 424 60.8
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.1e-141 507.3 435 61.8
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 5.4e-141 505.0 440 60.0
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.3e-139 500.4 456 59.6
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.3e-139 500.4 401 64.8
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.5e-138 496.9 410 60.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.9e-138 496.5 414 62.3
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.9e-138 496.5 441 58.0
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 3.3e-138 495.7 454 58.4
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.3e-138 495.7 441 59.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 4.8e-137 491.9 432 61.3
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.4e-136 490.3 442 59.0
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 5.3e-136 488.4 437 58.6
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 5.3e-136 488.4 481 55.5
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 9.0e-136 487.6 455 57.8
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 3.4e-135 485.7 406 61.1
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.2e-134 483.0 433 58.4
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 3.8e-134 482.3 423 59.8
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 8.4e-134 481.1 423 59.6
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.9e-133 479.9 438 58.9
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.2e-132 477.2 434 59.9
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 4.6e-132 475.3 525 51.8
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.1e-130 470.7 390 61.5
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.5e-130 469.5 473 54.1
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 5.6e-130 468.4 382 62.6
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 7.4e-130 468.0 433 55.4
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 6.2e-129 464.9 424 58.5
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.3e-128 461.8 346 69.7
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 3.2e-125 452.6 423 56.3
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 5.6e-122 441.8 440 54.3
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.3e-113 414.1 334 63.8
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 1.2e-111 407.5 449 48.3
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.5e-111 407.1 370 58.9
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.8e-110 402.5 243 78.6
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.0e-110 402.1 259 77.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.9e-107 392.5 444 51.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 3.4e-103 379.4 235 80.4
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.3e-102 377.5 229 75.5
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 2.3e-99 366.7 443 47.4
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 5.1e-99 365.5 354 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.7e-94 350.5 411 46.5
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.3e-91 340.1 368 52.4
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.2e-87 327.8 396 49.0
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 4.0e-83 312.8 436 41.3
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 2.8e-81 306.6 159 92.5
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 9.1e-80 301.6 339 49.0
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 7.2e-77 292.0 227 59.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 2.0e-74 283.9 226 57.5
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 9.1e-72 275.0 164 79.3
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 8.3e-65 251.9 266 54.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.9e-61 240.7 140 79.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.6e-60 236.5 407 39.8
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.6e-60 236.5 282 50.7
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.4e-58 229.9 139 74.1
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.4e-56 223.8 257 51.4
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.2e-56 223.4 454 33.7
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 6.0e-55 219.2 406 34.2
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 4.4e-50 203.0 380 35.3
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.5e-42 177.9 194 42.8
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.8e-42 176.0 103 80.6
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.0e-38 165.2 240 43.8
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 5.1e-38 162.9 171 44.4
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 4.4e-34 149.8 81 87.7
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 2.1e-31 141.0 75 84.0
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.5e-29 134.8 75 81.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 9.0e-27 125.6 99 66.7
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.2e-25 120.9 372 28.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-23 115.2 253 30.4
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.7e-23 114.0 232 28.9
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.0e-22 112.1 62 85.5
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 9.6e-21 105.5 81 63.0
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.0e-14 85.5 182 31.3
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 2.7e-07 60.8 30 83.3
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 6.7e-06 56.2 43 69.8


User provided reference genes

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