Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.2e-83 311.6 149 100.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 6.8e-49 197.6 170 62.9
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 8.9e-49 197.2 170 62.4
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 1.3e-47 193.4 170 60.6
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 2.2e-47 192.6 170 60.6
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 2.9e-47 192.2 170 60.6
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 4.9e-47 191.4 170 61.2
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 4.9e-47 191.4 170 60.6
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 6.4e-47 191.0 170 60.0
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 60.0
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 59.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 60.0
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 60.0
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 60.0
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 8.3e-47 190.7 170 60.0
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 1.1e-46 190.3 170 59.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 1.4e-46 189.9 170 60.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 1.4e-46 189.9 170 59.4
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 1.4e-46 189.9 170 59.4
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.9e-46 189.5 170 59.4
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 1.9e-46 189.5 176 57.4
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.4e-46 189.1 170 59.4
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.4e-46 189.1 170 59.4
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 2.4e-46 189.1 170 59.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 3.2e-46 188.7 170 60.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.2e-46 188.7 170 59.4
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 3.2e-46 188.7 170 58.8
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 3.2e-46 188.7 170 58.8
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 58.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 59.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 59.4
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 59.4
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 58.8
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 59.4
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 4.1e-46 188.3 170 59.4
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 5.4e-46 188.0 170 60.0
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 7.0e-46 187.6 170 58.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 58.8
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 9.2e-46 187.2 170 59.4
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.2e-45 186.8 170 58.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 1.2e-45 186.8 170 58.8
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 1.2e-45 186.8 170 58.8
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.2e-45 186.8 170 58.2
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 1.6e-45 186.4 170 58.8
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.0e-45 186.0 176 56.8
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 2.7e-45 185.7 170 58.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.7e-45 185.7 170 58.8
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.7e-45 185.7 170 58.8
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 2.7e-45 185.7 170 59.4
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 2.7e-45 185.7 170 58.8
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.5e-45 185.3 170 57.6
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 4.6e-45 184.9 170 58.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 4.6e-45 184.9 170 59.4
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.0e-45 184.5 170 58.2
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 7.8e-45 184.1 170 56.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 1.0e-44 183.7 170 58.8
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 2.3e-44 182.6 170 57.6
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 3.0e-44 182.2 170 57.6
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 3.0e-44 182.2 170 55.9
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 3.9e-44 181.8 170 58.2
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 6.6e-44 181.0 170 58.2
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 6.6e-44 181.0 170 58.2
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 1.5e-43 179.9 178 56.2
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 2.5e-43 179.1 170 55.3
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 3.3e-43 178.7 199 51.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.8e-42 175.6 190 53.2
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-41 173.7 147 60.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.4e-41 173.3 170 54.1
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 1.8e-41 172.9 170 53.5
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.8e-41 172.9 170 55.3
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 2.6e-40 169.1 147 59.9
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.8e-40 167.9 170 53.5
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 7.5e-40 167.5 147 59.2
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 7.5e-40 167.5 169 54.4
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.3e-35 151.8 120 64.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.6e-35 151.4 120 65.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.9e-31 139.0 143 53.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 3.5e-29 132.1 170 41.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 7.8e-29 131.0 170 41.2
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 1.3e-28 130.2 170 48.2
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 5.1e-28 128.3 171 43.9
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 7.3e-27 124.4 170 46.5
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 9.6e-27 124.0 170 46.5
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 6.4e-23 111.3 147 42.9
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.6e-21 105.1 166 38.6
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.0e-20 104.0 65 73.8
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.3e-19 98.6 121 45.5
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 2.4e-17 92.8 106 51.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.2e-14 82.4 103 47.6
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.0e-12 75.9 101 44.6
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 4.2e-06 55.5 35 68.6
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 4.2e-06 55.5 35 68.6
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.2e-06 55.5 35 68.6
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 4.2e-06 55.5 35 68.6
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 9.3e-06 54.3 35 65.7


User provided reference genes

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