Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 2441.4 1317 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1981.5 1317 78.9
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1950.3 1303 78.4
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1947.6 1317 77.6
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1940.6 1317 77.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1938.7 1317 77.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1909.4 1317 76.0
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1891.3 1317 75.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1870.5 1317 74.9
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1867.4 1317 75.0
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1864.4 1317 75.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1861.7 1317 75.2
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1840.1 1324 74.2
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1836.2 1317 74.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1828.1 1317 73.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1823.1 1317 73.3
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1817.0 1317 73.7
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1812.7 1317 72.7
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1804.3 1317 72.1
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1803.5 1365 71.4
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1799.3 1317 72.2
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1791.5 1317 71.5
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1785.0 1317 70.8
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1784.2 1317 71.8
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1779.6 1317 72.1
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1770.0 1549 63.9
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1762.3 1318 72.1
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1760.7 1370 70.1
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1755.7 1317 70.9
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1753.8 1436 67.3
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1737.2 1318 70.3
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1736.1 1319 70.7
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1729.5 1317 69.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1728.8 1317 69.8
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1716.8 1317 69.1
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1710.7 1325 69.2
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1708.7 1317 68.7
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1703.3 1317 68.5
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1701.4 1317 69.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1696.8 1317 68.0
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1691.0 1352 67.9
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1690.2 1303 69.6
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1688.7 1340 68.1
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1684.8 1317 68.8
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1680.6 1359 67.2
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1679.8 1332 68.2
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1332 68.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1210 73.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1674.1 1317 69.4
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1673.3 1317 67.6
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1667.5 1317 67.2
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1666.4 1317 67.7
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1651.3 1254 71.1
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1648.6 1317 66.8
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1642.5 1317 66.6
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1637.1 1317 67.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1634.8 1317 67.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1633.2 1210 72.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1624.4 1317 66.1
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1610.1 1261 68.0
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1597.4 1401 63.2
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1591.6 1337 65.1
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1583.2 1318 65.9
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1582.4 1318 65.8
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1582.0 1318 65.8
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1580.5 1317 64.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1557.7 1317 63.6
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1554.3 1303 63.9
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1552.3 1303 63.7
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1549.6 1317 63.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1541.6 1318 64.1
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1517.7 1317 62.8
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1516.9 1317 62.0
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1506.9 1370 62.0
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1493.0 1303 62.5
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1231.5 1317 51.6
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1122.5 1062 57.5
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1099.7 1317 47.2
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 4.0e-310 1068.5 1313 46.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.1e-299 1031.9 1025 57.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.6e-289 998.0 1316 45.1
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.8e-287 992.6 902 60.8
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 5.3e-286 988.4 1059 53.3
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 8.4e-284 981.1 743 68.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.6e-279 966.8 888 58.9
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.4e-272 941.4 759 66.5
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 6.2e-271 938.3 669 74.7
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.9e-270 934.9 631 76.4
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.6e-269 931.4 631 76.2
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 8.4e-268 927.9 761 63.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 9.3e-267 924.5 1252 44.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 5.3e-262 908.7 764 64.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.5e-261 905.6 1106 48.6
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 9.7e-240 834.7 731 61.6
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-239 834.3 787 60.7
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.8e-239 832.4 631 70.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.2e-229 801.2 558 74.7
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 9.1e-222 775.0 725 57.2
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 5.0e-212 742.7 735 58.4
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-210 738.0 594 67.0
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-210 738.0 594 67.0
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 7.0e-206 722.2 1276 37.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 4.0e-201 706.4 593 65.3
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.0e-164 585.5 1377 32.8
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.5e-160 571.6 526 60.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-153 548.9 438 68.5
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 7.6e-144 516.2 457 62.6
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 8.5e-143 512.7 350 77.7
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.6e-141 508.4 375 71.7
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.0e-140 504.2 435 63.0
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 3.1e-137 494.2 1328 30.2
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.3e-137 493.4 294 87.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.3e-135 488.8 1391 29.9
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.7e-122 445.3 1340 28.7
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.5e-119 433.3 222 95.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.7e-117 427.2 244 88.9
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 5.2e-116 423.7 391 59.1
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.6e-112 412.1 264 82.2
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-111 409.5 317 70.7
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.0e-111 407.1 408 56.4
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 7.2e-110 403.3 224 87.9
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.3e-106 392.5 851 35.4
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.9e-95 354.8 187 95.2
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.7e-90 337.8 223 79.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.5e-72 278.1 226 62.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.2e-61 243.0 126 91.3
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.4e-52 213.0 140 80.0
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.9e-50 204.5 139 79.9
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 3.5e-48 198.4 170 62.9
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 8.4e-42 177.2 125 72.0
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 5.1e-39 167.9 87 95.4
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 2.8e-37 162.2 225 47.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.2e-34 152.5 105 76.2
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 9.3e-33 147.1 72 93.1
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.2e-27 130.2 114 59.6
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 7.6e-27 127.5 165 47.9
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 4.2e-25 121.7 141 48.9
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.5e-22 112.5 100 62.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 8.2e-21 107.5 64 84.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.8e-20 106.3 64 79.7
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 6.9e-20 104.4 106 57.5
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 9.4e-17 94.0 91 57.1
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.7e-16 92.4 77 66.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.7e-13 83.2 53 75.5
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 4.2e-09 68.6 265 27.2
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 5.5e-09 68.2 63 63.5
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 7.2e-09 67.8 88 46.6
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 4.7e-08 65.1 57 66.7
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 6.1e-08 64.7 126 38.1
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.8e-07 60.8 33 90.9


User provided reference genes

Program Settings