Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.5e-232 808.5 435 100.0
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.1e-203 711.4 436 89.0
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 5.4e-147 525.0 372 78.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.5e-146 522.3 373 78.0
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 6.0e-146 521.5 400 67.5
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.3e-145 520.4 357 73.4
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.7e-145 520.0 358 77.4
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.3e-145 519.6 358 79.1
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 5.1e-145 518.5 362 72.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 5.1e-145 518.5 356 73.6
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 8.7e-145 517.7 370 70.3
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.5e-144 516.9 371 70.4
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.9e-144 516.5 356 73.3
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.5e-144 516.2 358 77.7
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 2.5e-144 516.2 357 71.7
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.3e-144 515.8 373 69.7
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 3.3e-144 515.8 371 74.9
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 5.6e-144 515.0 379 69.4
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 7.3e-144 514.6 372 76.1
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 7.3e-144 514.6 375 69.6
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 9.6e-144 514.2 354 78.5
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 9.6e-144 514.2 356 78.1
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 9.6e-144 514.2 356 73.0
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-143 513.8 358 72.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.3e-143 513.8 358 72.1
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.3e-143 513.8 358 72.1
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.3e-143 513.8 373 71.6
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 1.6e-143 513.5 357 77.0
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.1e-143 513.1 379 69.1
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.8e-143 512.7 369 70.2
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.8e-143 512.7 358 72.1
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 2.8e-143 512.7 372 68.8
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 2.8e-143 512.7 373 70.0
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 4.8e-143 511.9 360 77.2
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 6.2e-143 511.5 369 70.5
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 6.2e-143 511.5 368 71.2
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 8.1e-143 511.1 368 75.3
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 8.1e-143 511.1 418 63.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 8.1e-143 511.1 358 77.1
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.1e-142 510.8 357 72.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.1e-142 510.8 357 72.0
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.1e-142 510.8 370 74.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.1e-142 510.8 365 70.4
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 1.4e-142 510.4 418 63.9
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.4e-142 510.4 357 72.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-142 510.4 398 73.4
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.4e-142 510.4 357 72.0
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.8e-142 510.0 356 72.2
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.8e-142 510.0 359 71.3
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.8e-142 510.0 368 75.0
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.8e-142 510.0 379 69.1
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.1e-142 509.2 370 73.8
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 3.1e-142 509.2 359 71.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 3.1e-142 509.2 359 71.0
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 4.0e-142 508.8 368 70.7
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 5.3e-142 508.4 357 76.8
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 6.9e-142 508.1 374 69.0
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 6.9e-142 508.1 374 69.0
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 9.0e-142 507.7 357 71.1
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 9.0e-142 507.7 374 74.1
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 9.0e-142 507.7 361 70.9
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.2e-141 507.3 357 76.2
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.2e-141 507.3 356 75.0
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.5e-141 506.9 356 71.1
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.6e-141 506.1 358 70.7
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.6e-141 506.1 359 71.6
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 3.4e-141 505.8 410 63.4
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 5.8e-141 505.0 377 67.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 5.8e-141 505.0 362 76.0
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 9.9e-141 504.2 360 70.6
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 9.9e-141 504.2 358 70.9
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.3e-140 503.8 329 79.0
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.7e-140 503.4 357 71.1
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.7e-140 503.4 363 70.0
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.2e-140 503.1 361 70.4
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.9e-140 502.7 405 67.9
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.9e-140 502.7 329 73.6
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 2.9e-140 502.7 361 69.5
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.8e-140 502.3 357 70.9
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-139 500.4 354 75.7
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 2.4e-139 499.6 356 70.8
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.2e-139 499.2 327 79.5
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.2e-139 499.2 327 79.5
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 4.2e-139 498.8 380 67.4
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 4.2e-139 498.8 347 76.1
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 5.4e-139 498.4 390 66.7
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 7.1e-139 498.0 370 69.5
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.6e-138 496.9 379 70.7
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.3e-137 493.8 380 66.8
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.8e-137 493.4 367 66.8
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 6.7e-137 491.5 418 61.7
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.9e-136 490.0 339 72.0
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.3e-136 489.2 369 67.5
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 5.3e-134 481.9 352 68.5
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 7.6e-133 478.0 359 69.4
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.9e-132 476.1 357 66.7
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 2.9e-132 476.1 336 75.3
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.1e-131 474.2 363 67.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 1.9e-131 473.4 339 75.5
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 7.9e-130 468.0 340 68.8
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.3e-129 466.5 467 58.7
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 1.3e-127 460.7 474 53.2
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.7e-127 459.1 336 67.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.3e-124 450.7 337 72.7
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 9.3e-123 444.5 506 53.6
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.8e-121 440.3 410 58.0
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 8.2e-119 431.4 370 67.3
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.0e-117 426.8 540 49.8
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 8.8e-113 411.4 384 61.5
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 9.1e-110 401.4 484 51.9
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 4.2e-107 392.5 421 55.3
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.1e-102 377.9 367 60.2
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 7.0e-102 375.2 398 59.0
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.1e-96 357.8 203 84.7
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.0e-85 320.5 209 75.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 3.4e-80 303.1 294 57.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.3e-65 253.8 366 44.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 5.6e-51 206.1 114 85.1
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.1e-46 191.8 181 59.1
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.2e-38 163.3 122 67.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-37 161.4 111 73.0
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 3.1e-33 147.1 210 46.7
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 7.3e-27 125.9 69 78.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.9e-23 114.0 85 62.4
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.4e-23 112.8 73 78.1
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 4.2e-22 110.2 84 60.7
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.8e-18 96.7 53 79.2
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.2e-15 87.8 92 51.1
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.0e-12 79.0 98 44.9
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 5.7e-11 73.2 38 84.2
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 5.7e-11 73.2 62 61.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.8e-09 68.2 61 57.4
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 2.0e-08 64.7 43 72.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.0e-07 62.4 70 51.4
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.2e-06 57.4 39 64.1


User provided reference genes

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