Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 4288.4 2160 100.0
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 4140.1 2080 100.0
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2822.7 2143 68.8
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2249.2 2230 55.3
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2181.0 2234 53.5
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 1854.3 2288 46.8
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1593.2 2181 43.6
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1581.2 2164 43.5
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1464.9 2217 41.7
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1349.0 2161 39.8
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1204.9 2172 36.2
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1196.8 2176 35.8
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1191.8 2188 35.8
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1181.0 2167 36.1
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1178.3 2203 35.7
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1175.6 2197 35.6
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1172.1 2164 36.1
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1171.8 2194 35.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1171.4 2191 35.7
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1171.0 2175 36.1
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1170.6 2186 35.2
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1168.7 2195 35.3
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1168.7 2210 36.2
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1167.5 2196 34.9
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1167.1 2182 35.3
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1167.1 2194 35.3
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1165.2 2206 36.0
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1164.4 2189 35.2
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1164.1 2177 36.0
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1164.1 2162 35.1
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 2171 35.2
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 2205 35.9
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1162.5 2206 35.7
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1161.4 2169 35.0
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1160.6 2173 35.1
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1160.2 2174 35.0
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1159.8 2179 35.8
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1156.7 2185 35.1
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1155.6 2178 35.0
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1154.8 2184 35.1
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1152.9 2178 35.4
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1152.5 2230 34.7
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1151.3 2220 35.2
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1151.0 2221 34.6
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 2218 34.4
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1149.8 2169 34.9
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1147.9 2158 35.7
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1146.3 2195 34.8
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1146.3 2171 35.6
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1144.4 2189 35.2
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2139 35.4
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2092 36.0
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2181 34.9
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1135.6 2116 35.3
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1135.2 2224 34.4
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1134.8 2200 34.6
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1132.5 2151 35.2
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1131.7 2171 35.0
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1131.3 2201 34.8
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1128.6 2164 35.1
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1127.9 2195 35.8
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1126.7 2185 34.7
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1125.9 2183 34.5
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1125.2 2159 35.1
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1123.2 2186 34.6
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1122.1 2196 34.6
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1119.4 2193 34.7
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1118.6 2192 34.9
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1116.3 2194 34.7
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1112.8 2169 34.4
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1110.5 2190 34.8
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1110.1 2173 35.1
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1109.0 2181 34.1
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1105.1 2179 34.1
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1104.7 2192 35.1
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1096.3 2148 34.4
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1096.3 2184 35.1
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1095.9 2157 34.6
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1095.5 2182 34.2
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1095.1 2176 33.8
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1094.7 2345 32.8
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1094.7 2272 33.5
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1094.7 2210 34.6
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1094.3 2198 34.3
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1094.0 2192 33.5
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1093.6 2174 33.9
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1090.9 2198 34.9
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1090.1 2180 34.3
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1083.6 2156 33.8
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1080.9 2198 34.5
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1075.1 2186 33.8
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 3.0e-311 1073.2 2164 33.8
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 1.6e-308 1063.9 2274 33.1
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.1e-308 1063.5 2173 33.8
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 4.7e-308 1062.4 2166 33.7
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 4.7e-308 1062.4 2165 33.8
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.3e-305 1054.3 2135 33.7
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 9.2e-304 1048.1 2171 33.6
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 9.2e-304 1048.1 2175 33.4
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 9.2e-304 1048.1 2175 33.5
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 1.2e-303 1047.7 2173 33.4
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 1.2e-303 1047.7 2173 33.4
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 4.5e-303 1045.8 2590 32.2
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 1.7e-302 1043.9 2175 33.2
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.3e-302 1043.5 2198 34.1
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 2.5e-301 1040.0 2173 33.3
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 1.2e-300 1037.7 2181 33.2
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 6.8e-299 1031.9 2172 32.5
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 1.5e-298 1030.8 2172 32.6
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 2.0e-298 1030.4 2156 33.4
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 5.8e-298 1028.9 2163 32.7
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 2.0e-295 1020.4 2145 32.9
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.7e-294 1017.3 2145 32.9
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 3.0e-294 1016.5 2157 32.9
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 5.0e-294 1015.8 2157 32.9
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 3.6e-292 1009.6 2145 33.1
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-291 1007.3 2138 32.8
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 3.1e-291 1006.5 2156 32.7
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.6e-260 903.3 2186 31.5
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 8.4e-257 892.1 2174 31.4
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 3.4e-226 790.4 1460 36.5
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 5.0e-225 786.6 2158 29.2
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.2e-223 781.9 1796 32.5
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 3.6e-223 780.4 1338 36.5
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 9.7e-221 772.3 1256 37.7
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.7e-194 684.5 1289 35.8
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 1.6e-191 675.2 1297 34.4
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 3.0e-190 671.0 1384 33.7
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.8e-187 661.8 1732 30.4
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.1e-184 652.5 1316 34.1
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 6.0e-178 630.2 1734 30.2
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.5e-173 615.5 1299 33.7
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 4.4e-173 614.0 1803 28.9
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 5.4e-155 553.9 1269 31.8
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.1e-154 552.0 2038 26.9
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 2.0e-149 535.4 876 38.6
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.3e-144 516.9 875 37.1
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-142 512.3 1398 29.5
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.6e-141 508.4 878 36.0
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 4.2e-139 501.1 876 36.0
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 3.9e-129 468.0 1023 34.8
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.9e-128 465.7 266 89.8
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 5.1e-121 441.0 2278 26.3
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.6e-119 436.0 831 35.4
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 1.3e-111 409.8 863 33.5
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 1.2e-93 350.1 757 33.0
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 3.8e-92 345.1 896 31.0
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 3.8e-92 345.1 397 46.9
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 8.5e-84 317.4 493 38.1
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 2.7e-82 312.4 1277 25.5
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 2.8e-79 302.4 383 43.1
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 1.6e-74 286.6 305 47.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 2.3e-68 266.2 432 37.3
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 6.2e-66 258.1 300 45.7
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 2.2e-63 249.6 2182 21.0
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 5.4e-62 245.0 326 38.7
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.3e-57 229.6 2161 20.7
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.5e-56 226.9 2132 21.4
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 1.2e-50 207.2 367 35.7
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 1.3e-47 197.2 316 39.2
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 8.4e-47 194.5 377 35.5
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.0e-45 188.3 936 24.1
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 4.6e-37 162.2 176 44.3
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.3e-36 159.8 870 21.8
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 3.6e-34 152.5 472 28.0
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.2e-34 151.8 962 23.3
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-32 146.7 946 22.3
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.2e-26 125.2 165 41.2
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 1.4e-25 124.0 142 45.8
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 6.4e-23 115.2 155 45.8
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 6.4e-23 115.2 273 29.3
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 1.1e-19 104.4 146 41.1
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 5.6e-19 102.1 75 65.3
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 1.5e-16 94.0 97 43.3
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 2.7e-13 83.2 299 26.1
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 7.9e-13 81.6 250 29.2
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 7.9e-13 81.6 71 47.9
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 5.7e-11 75.5 115 35.7
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.4e-08 66.2 114 36.8
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 5.9e-08 65.5 55 58.2
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.9e-06 60.5 40 65.0
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 3.2e-06 59.7 126 28.6


User provided reference genes

Program Settings