Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 7.5e-95 350.5 177 100.0
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 8.4e-38 161.0 112 68.8
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 1.9e-37 159.8 110 70.0
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 1.2e-36 157.1 109 69.7
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 3.5e-36 155.6 110 74.5
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 2.3e-35 152.9 110 70.0
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 1.9e-34 149.8 110 68.2
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 3.3e-34 149.1 110 64.5
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 3.3e-34 149.1 110 66.4
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 3.3e-34 149.1 110 66.4
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 9.6e-34 147.5 110 63.6
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 9.6e-34 147.5 109 67.9
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 2.1e-33 146.4 109 64.2
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 1.1e-32 144.1 110 66.4
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 5.3e-32 141.7 110 68.2
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 5.3e-32 141.7 108 70.4
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 9.0e-32 141.0 126 61.1
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.0e-31 139.8 98 72.4
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 5.8e-31 138.3 107 67.3
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 9.9e-31 137.5 111 60.4
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 9.9e-31 137.5 113 63.7
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.7e-30 136.7 108 63.9
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 4.9e-30 135.2 84 81.0
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 4.9e-30 135.2 110 62.7
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 2.1e-28 129.8 111 63.1
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 4.6e-28 128.6 110 60.0
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 4.6e-28 128.6 110 60.9
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 1.3e-27 127.1 115 58.3
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 1.8e-27 126.7 80 77.5
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 3.0e-27 125.9 108 62.0
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 3.9e-27 125.6 121 56.2
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.1e-27 125.2 110 60.0
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.1e-27 125.2 110 60.0
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 8.7e-27 124.4 110 56.4
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.1e-26 124.0 109 60.6
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.1e-26 124.0 110 57.3
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.3e-26 122.5 109 59.6
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 4.3e-26 122.1 109 58.7
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 9.6e-26 120.9 111 57.7
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.6e-25 120.2 110 57.3
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 1.6e-25 120.2 110 58.2
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 2.1e-25 119.8 110 60.9
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 2.1e-25 119.8 108 55.6
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 2.1e-25 119.8 110 58.2
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 2.8e-25 119.4 110 60.9
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 2.8e-25 119.4 111 60.4
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 3.7e-25 119.0 112 58.0
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 3.7e-25 119.0 112 58.0
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 4.8e-25 118.6 106 59.4
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 6.2e-25 118.2 110 56.4
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.1e-24 117.5 110 59.1
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 1.1e-24 117.5 110 56.4
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.4e-24 117.1 108 57.4
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.8e-24 116.7 110 54.5
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 3.1e-24 115.9 110 55.5
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 3.1e-24 115.9 109 56.9
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 4.0e-24 115.5 85 67.1
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.3e-24 115.2 109 54.1
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.3e-24 115.2 110 56.4
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 6.9e-24 114.8 109 54.1
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 9.0e-24 114.4 106 58.5
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 9.0e-24 114.4 110 57.3
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 9.0e-24 114.4 114 54.4
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.2e-23 114.0 110 53.6
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.5e-23 113.6 122 50.8
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 1.5e-23 113.6 111 54.1
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.5e-23 113.6 112 55.4
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 2.6e-23 112.8 109 55.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.6e-23 112.8 110 55.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 3.4e-23 112.5 110 55.5
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 4.5e-23 112.1 110 54.5
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 5.8e-23 111.7 69 73.9
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 5.8e-23 111.7 69 73.9
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.0e-22 110.9 110 55.5
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.3e-22 110.5 69 73.9
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 2.2e-22 109.8 110 51.8
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 2.9e-22 109.4 110 51.8
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.9e-22 108.6 110 54.5
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 4.9e-22 108.6 108 53.7
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 4.9e-22 108.6 108 53.7
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 8.4e-22 107.8 91 62.6
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 1.9e-21 106.7 107 54.2
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 2.5e-21 106.3 121 52.1
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 2.5e-21 106.3 113 49.6
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 3.2e-21 105.9 108 52.8
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 3.2e-21 105.9 110 51.8
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 7.1e-21 104.8 69 69.6
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 7.1e-21 104.8 110 50.9
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 2.7e-20 102.8 109 52.3
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 2.7e-20 102.8 81 65.4
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 2.7e-20 102.8 130 45.4
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 3.5e-20 102.4 110 53.6
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 4.6e-20 102.1 75 61.3
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 4.6e-20 102.1 110 50.0
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 6.0e-20 101.7 111 49.5
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 7.9e-20 101.3 57 82.5
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 7.9e-20 101.3 67 68.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 1.0e-19 100.9 111 50.5
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.3e-19 99.8 89 56.2
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.0e-19 99.4 60 78.3
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 3.0e-19 99.4 109 50.5
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 5.1e-19 98.6 113 49.6
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.9e-18 96.7 113 48.7
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 4.3e-18 95.5 106 51.9
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 5.7e-18 95.1 106 50.0
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 7.4e-18 94.7 113 47.8
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 9.6e-18 94.4 94 47.9
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 2.1e-17 93.2 59 74.6
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 3.7e-17 92.4 89 49.4
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 1.1e-16 90.9 69 58.0
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.8e-16 90.1 84 54.8
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 6.9e-16 88.2 110 48.2
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.5e-15 85.5 50 78.0
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.5e-15 85.5 50 78.0
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 5.8e-15 85.1 87 52.9
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 7.6e-15 84.7 87 50.6
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 1.0e-14 84.3 88 51.1
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.3e-14 84.0 110 43.6
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.3e-14 84.0 204 33.3
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 2.9e-14 82.8 86 52.3
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 3.8e-14 82.4 114 43.0
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 1.1e-13 80.9 54 70.4
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 1.4e-13 80.5 86 51.2
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 5.5e-13 78.6 113 41.6
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 1.6e-12 77.0 110 44.5
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.6e-12 77.0 110 44.5
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 2.1e-12 76.6 114 40.4
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 2.7e-12 76.3 64 51.6
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 7.9e-12 74.7 113 41.6
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 1.8e-11 73.6 109 44.0
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 6.7e-11 71.6 100 41.0
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 1.9e-10 70.1 112 43.8
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 2.5e-10 69.7 113 38.9
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 4.3e-10 68.9 83 45.8
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 1.3e-09 67.4 111 39.6
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 2.8e-09 66.2 80 46.2
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 1.4e-08 63.9 118 39.8
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 3.1e-08 62.8 87 41.4
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 5.3e-08 62.0 107 38.3
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 1.2e-07 60.8 47 59.6
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 7.7e-07 58.2 59 52.5


User provided reference genes

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