Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.5e-203 712.6 361 100.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 9.6e-174 613.6 337 91.7
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.1e-145 520.4 288 86.5
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.2e-145 518.5 288 86.1
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.7e-144 515.8 281 87.2
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.7e-144 515.8 283 87.3
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.7e-144 515.0 289 85.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.7e-144 515.0 268 89.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 8.0e-144 514.2 271 89.7
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.0e-143 513.8 285 86.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.0e-143 513.8 288 85.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 1.0e-143 513.8 286 86.0
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.4e-143 513.5 289 85.5
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.8e-143 513.1 274 89.1
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-143 512.7 285 86.3
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.3e-143 512.7 265 91.7
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.3e-143 512.7 280 88.2
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 4.0e-143 511.9 271 89.7
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 5.2e-143 511.5 274 88.7
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 5.2e-143 511.5 274 88.7
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 5.2e-143 511.5 274 88.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 5.2e-143 511.5 274 88.7
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 5.2e-143 511.5 288 84.7
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.2e-143 511.5 288 84.7
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.2e-143 511.5 268 90.7
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 8.8e-143 510.8 271 89.3
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 8.8e-143 510.8 271 89.3
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 8.8e-143 510.8 271 89.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 8.8e-143 510.8 274 88.7
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 8.8e-143 510.8 286 86.0
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.8e-143 510.8 275 88.4
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 8.8e-143 510.8 279 87.5
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.1e-142 510.4 283 86.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-142 510.0 268 89.9
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.5e-142 510.0 286 85.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.0e-142 509.6 266 90.2
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.0e-142 509.6 272 89.0
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.0e-142 509.6 265 90.2
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.0e-142 509.6 268 90.3
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.0e-142 509.6 267 89.9
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.0e-142 509.6 275 88.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.6e-142 509.2 266 90.2
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 2.6e-142 509.2 266 90.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.6e-142 509.2 286 85.7
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.6e-142 509.2 268 89.9
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.3e-142 508.8 313 80.2
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 3.3e-142 508.8 282 86.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.3e-142 508.8 283 85.9
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.4e-142 508.4 285 86.0
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 4.4e-142 508.4 268 89.9
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 4.4e-142 508.4 262 91.6
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 5.7e-142 508.1 287 84.7
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.7e-142 508.1 284 85.6
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 5.7e-142 508.1 284 85.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 7.5e-142 507.7 277 87.4
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.5e-142 507.7 288 84.7
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.5e-142 507.7 288 84.7
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.5e-142 507.7 288 84.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 7.5e-142 507.7 281 87.5
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 7.5e-142 507.7 265 90.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 7.5e-142 507.7 268 88.8
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.7e-142 507.3 272 88.6
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.7e-142 507.3 272 88.6
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 9.7e-142 507.3 268 89.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 9.7e-142 507.3 268 89.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 9.7e-142 507.3 283 85.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 9.7e-142 507.3 284 85.2
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 9.7e-142 507.3 289 84.8
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 9.7e-142 507.3 282 86.5
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.3e-141 506.9 271 88.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-141 506.9 282 86.2
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.3e-141 506.9 316 79.7
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.7e-141 506.5 268 89.2
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.2e-141 506.1 265 89.8
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.2e-141 506.1 262 91.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 2.2e-141 506.1 291 84.5
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 2.8e-141 505.8 268 89.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.8e-141 505.8 283 85.9
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 3.7e-141 505.4 281 87.2
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.7e-141 505.4 262 90.5
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 4.8e-141 505.0 278 87.4
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 4.8e-141 505.0 324 76.9
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.8e-141 505.0 262 91.2
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 4.8e-141 505.0 283 85.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 6.3e-141 504.6 283 84.8
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 8.2e-141 504.2 312 79.5
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 8.2e-141 504.2 285 84.9
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 8.2e-141 504.2 262 90.8
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-140 503.8 339 77.3
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.1e-140 503.8 282 85.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.1e-140 503.8 262 91.2
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.1e-140 503.8 262 90.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.4e-140 503.4 268 87.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-140 503.4 280 85.7
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-140 502.7 324 76.5
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.1e-140 502.3 285 85.3
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 4.1e-140 501.9 284 85.2
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 4.1e-140 501.9 331 76.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 4.1e-140 501.9 268 88.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 5.3e-140 501.5 262 90.5
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 7.0e-140 501.1 278 86.3
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.0e-140 501.1 278 86.3
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.0e-140 501.1 313 78.9
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.2e-139 500.4 315 78.4
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.6e-139 500.0 277 87.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.6e-139 500.0 283 84.8
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.0e-139 499.6 281 84.7
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.0e-139 499.6 287 83.6
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.7e-139 499.2 336 75.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-139 498.4 278 86.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.0e-138 497.3 324 75.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.3e-138 496.9 285 84.2
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.5e-138 494.6 276 86.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 3.2e-137 492.3 289 83.4
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 4.2e-137 491.9 260 89.6
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.4e-137 490.7 307 79.8
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 6.1e-136 488.0 268 85.4
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 3.7e-133 478.8 245 91.4
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.1e-124 449.1 306 71.6
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.1e-124 449.1 268 77.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.0e-123 446.4 234 90.2
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 6.6e-122 441.4 292 75.7
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 5.6e-121 438.3 268 80.2
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.4e-119 433.7 282 75.9
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.8e-119 433.3 263 77.9
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.0e-114 417.5 285 73.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 9.5e-113 411.0 322 65.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.2e-111 405.2 247 80.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.4e-108 397.1 246 79.7
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 8.1e-104 381.3 286 68.2
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 4.6e-99 365.5 317 62.8
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-90 337.4 284 62.0
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.2e-85 320.1 235 67.7
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.1e-80 303.5 160 86.9
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.6e-43 181.0 167 61.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.7e-43 180.3 103 87.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 6.7e-26 122.5 117 58.1
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 4.8e-24 116.3 75 76.0
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-23 114.0 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.1e-23 113.6 58 91.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 1.6e-19 101.3 58 86.2
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 4.7e-19 99.8 47 93.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 7.7e-14 82.4 44 79.5
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.0e-13 82.0 44 77.3
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.2e-12 77.0 42 88.1
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 6.1e-11 72.8 39 87.2
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 6.3e-08 62.8 53 62.3
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.8e-06 55.8 29 79.3


User provided reference genes

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