Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 4.1e-107 391.3 190 100.0
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 7.0e-83 310.8 188 76.6
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.7e-76 289.7 188 69.7
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 9.5e-72 273.9 189 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.1e-70 270.4 189 66.7
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 5.6e-56 221.5 200 51.5
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.3e-55 220.3 193 53.9
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.6e-55 219.9 193 51.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.8e-55 219.2 188 54.3
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.8e-55 219.2 193 52.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.6e-55 218.8 193 51.3
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 8.1e-55 217.6 201 49.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-54 217.2 188 53.7
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-54 217.2 188 53.7
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.8e-54 216.5 189 54.0
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 5.3e-54 214.9 193 50.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 5.3e-54 214.9 187 51.9
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.0e-53 213.0 194 50.0
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 2.0e-53 213.0 188 52.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.6e-53 212.6 193 51.3
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.6e-53 212.6 193 51.8
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.4e-53 212.2 193 51.3
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.8e-53 211.5 195 50.8
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 5.8e-53 211.5 193 50.3
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-52 210.3 193 51.3
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.7e-52 209.9 193 51.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.7e-52 209.9 193 51.8
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 2.2e-52 209.5 188 51.1
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 6.4e-52 208.0 193 49.7
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 6.4e-52 208.0 188 53.7
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 8.4e-52 207.6 201 48.8
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-51 207.2 201 49.3
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.1e-51 207.2 201 48.8
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.1e-51 207.2 201 48.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.1e-51 207.2 188 50.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.4e-51 206.8 192 48.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.9e-51 206.5 193 50.3
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 3.2e-51 205.7 194 52.1
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.2e-51 205.7 188 49.5
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 5.4e-51 204.9 193 48.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 7.1e-51 204.5 195 48.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 9.3e-51 204.1 203 50.7
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.2e-50 203.8 201 48.8
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.6e-50 203.4 204 48.0
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.6e-50 203.4 204 49.5
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.1e-50 203.0 194 50.0
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 6.0e-50 201.4 200 48.0
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 7.9e-50 201.1 195 49.2
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.3e-49 200.3 229 44.5
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 2.3e-49 199.5 195 49.2
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 5.1e-49 198.4 189 49.2
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.6e-49 198.0 197 47.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 6.6e-49 198.0 195 49.2
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 8.7e-49 197.6 193 47.7
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 8.7e-49 197.6 194 48.5
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 8.7e-49 197.6 207 44.4
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.1e-48 197.2 195 50.8
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.1e-48 197.2 194 49.5
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.5e-48 196.8 195 49.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-48 196.4 195 49.2
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-48 196.4 195 49.2
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.9e-48 196.4 195 49.2
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-48 194.9 206 43.7
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.6e-48 194.9 206 43.7
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 9.6e-48 194.1 236 42.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 9.6e-48 194.1 195 46.7
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.3e-47 193.7 194 48.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.1e-47 193.0 200 45.5
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.1e-47 193.0 193 49.2
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.8e-47 192.6 194 45.9
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.1e-46 190.7 194 47.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.4e-46 190.3 227 42.3
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.4e-46 190.3 227 42.3
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.4e-46 189.5 193 47.7
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.4e-46 189.5 200 45.5
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 2.4e-46 189.5 191 50.3
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.0e-46 188.7 200 47.0
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 5.3e-46 188.3 178 50.6
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 9.0e-46 187.6 194 45.4
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.0e-45 186.4 209 43.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.0e-45 186.4 199 47.7
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 3.4e-45 185.7 199 46.2
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.4e-45 185.7 179 49.2
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 5.8e-45 184.9 187 49.2
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.3e-44 183.7 207 42.5
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.7e-44 183.3 192 45.8
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.7e-44 183.3 179 49.2
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.7e-44 183.3 211 41.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 1.1e-43 180.6 181 48.1
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.9e-43 179.9 207 41.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.9e-43 179.9 221 41.6
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.4e-43 179.5 235 41.7
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 7.1e-43 177.9 223 41.3
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 1.2e-42 177.2 209 41.6
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 4.6e-42 175.3 192 43.2
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 6.0e-42 174.9 192 44.8
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.3e-41 173.7 185 46.5
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-41 173.3 192 43.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.3e-41 172.9 193 44.0
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.9e-40 169.9 209 40.7
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.9e-40 169.9 169 49.1
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 4.3e-40 168.7 193 44.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.2e-39 164.9 211 40.3
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 8.1e-39 164.5 185 46.5
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 4.5e-37 158.7 260 33.5
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 5.8e-37 158.3 98 70.4
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.7e-36 156.8 193 45.6
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.4e-35 153.7 177 43.5
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.2e-34 150.6 158 46.2
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 1.6e-34 150.2 165 44.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.3e-33 147.1 157 47.1
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.6e-31 140.2 200 39.0
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.1e-31 139.8 121 52.9
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 4.5e-29 132.1 127 52.0
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 7.6e-29 131.3 188 38.3
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 1.3e-28 130.6 124 52.4
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 6.5e-28 128.3 135 46.7
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.8e-25 120.2 116 50.0
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.5e-24 116.3 132 44.7
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 3.7e-23 112.5 109 49.5
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.8e-23 112.1 97 52.6
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.4e-22 109.8 97 49.5
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.1e-22 109.0 138 39.9
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.2e-21 107.5 93 50.5
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.7e-20 103.6 115 49.6
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.2e-19 99.4 128 43.8
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.4e-19 97.8 101 45.5
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.5e-16 90.5 95 44.2
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.7e-16 87.8 81 55.6
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.8e-15 86.3 97 45.4
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.2e-13 80.9 68 54.4
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 2.6e-13 79.7 70 50.0
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.6e-13 79.7 167 34.1
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 4.5e-13 79.0 61 52.5
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.5e-13 79.0 68 50.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 4.5e-13 79.0 61 47.5
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 8.5e-12 74.7 100 40.0
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.5e-11 73.2 61 49.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 3.6e-10 69.3 106 34.9
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 6.1e-10 68.6 76 44.7
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 5.1e-09 65.5 60 51.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.8e-09 64.7 70 38.6
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-08 63.9 62 41.9
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.7e-08 61.2 46 50.0
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 4.8e-07 58.9 38 65.8
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 8.2e-07 58.2 42 57.1
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 1.8e-06 57.0 189 27.0
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 5.3e-06 55.5 152 25.7
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 9.1e-06 54.7 152 25.0
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 9.1e-06 54.7 152 25.0


User provided reference genes

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