Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.3e-223 776.9 399 100.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.0e-192 675.2 399 86.2
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.7e-184 647.1 399 84.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.4e-144 516.9 355 75.5
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.1e-141 505.8 317 79.5
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.9e-138 496.5 312 79.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 3.6e-137 492.3 350 72.6
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.1e-137 491.5 359 70.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.0e-137 491.1 350 72.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.0e-136 490.7 344 73.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.3e-136 489.6 314 77.4
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.3e-136 489.6 314 77.4
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.0e-136 489.2 316 77.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.0e-136 488.8 314 77.7
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.2e-135 487.3 355 71.0
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-135 487.3 358 70.4
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.2e-135 487.3 314 77.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.6e-135 486.1 342 73.4
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.6e-135 486.1 350 72.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.4e-135 485.7 321 76.6
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.7e-135 485.0 326 75.5
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.5e-135 484.6 315 76.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 7.5e-135 484.6 313 78.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.3e-134 483.8 346 73.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.7e-134 483.4 314 76.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.2e-134 483.0 375 67.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.2e-134 483.0 315 77.1
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.7e-134 482.3 313 77.0
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 4.8e-134 481.9 350 72.0
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.8e-134 481.9 347 71.5
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 6.3e-134 481.5 313 77.0
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.3e-134 481.5 333 74.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 8.3e-134 481.1 331 74.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 8.3e-134 481.1 357 69.7
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 8.3e-134 481.1 339 72.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 8.3e-134 481.1 329 74.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.1e-133 480.7 315 76.2
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-133 480.7 312 77.6
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.1e-133 480.7 352 71.9
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.1e-133 480.7 347 72.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.4e-133 480.3 314 76.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.4e-133 480.3 315 76.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.8e-133 479.9 339 72.9
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-133 479.9 321 75.4
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.4e-133 479.6 350 71.1
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.4e-133 479.6 351 71.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.4e-133 479.6 312 77.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.4e-133 479.6 348 71.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.4e-133 479.6 313 77.6
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.1e-133 479.2 314 76.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.1e-133 479.2 364 69.2
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-133 478.8 355 71.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 4.1e-133 478.8 312 77.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 4.1e-133 478.8 344 72.1
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 5.4e-133 478.4 354 71.5
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 5.4e-133 478.4 336 72.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 5.4e-133 478.4 318 75.8
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 7.0e-133 478.0 314 77.1
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 7.0e-133 478.0 313 76.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 9.1e-133 477.6 313 77.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 9.1e-133 477.6 331 73.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.2e-132 477.2 326 74.2
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.0e-132 476.5 321 74.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.0e-132 476.5 330 74.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.7e-132 476.1 313 77.0
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.7e-132 476.1 314 76.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.5e-132 475.3 348 71.0
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.9e-132 474.9 325 74.5
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 5.9e-132 474.9 326 73.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 7.7e-132 474.6 315 75.9
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.7e-132 474.6 312 76.6
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.0e-131 474.2 312 76.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.0e-131 474.2 310 76.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.3e-131 473.8 321 74.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.3e-131 473.8 330 72.7
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.3e-131 473.8 324 73.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.3e-131 473.8 348 71.0
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.7e-131 473.4 327 74.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-131 473.4 346 69.9
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.2e-131 473.0 351 70.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.2e-131 473.0 346 70.2
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.9e-131 472.6 345 71.0
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.9e-131 472.6 326 74.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.9e-131 472.6 330 73.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 3.8e-131 472.2 348 69.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.8e-131 472.2 314 75.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 5.0e-131 471.9 331 73.1
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 6.5e-131 471.5 356 69.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.1e-130 470.7 312 75.0
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.1e-130 470.7 312 75.0
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.9e-130 469.9 321 74.1
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-130 469.9 366 68.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-130 469.9 332 72.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-130 469.9 332 72.0
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.5e-130 469.5 314 75.8
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.2e-130 469.2 317 75.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.2e-130 469.2 312 74.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 4.2e-130 468.8 314 75.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.2e-130 468.8 335 73.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 5.5e-130 468.4 312 74.4
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 7.2e-130 468.0 332 71.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.2e-130 468.0 312 74.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 7.2e-130 468.0 351 69.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.2e-130 468.0 329 72.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 7.2e-130 468.0 322 73.3
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 9.4e-130 467.6 323 73.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 9.4e-130 467.6 328 72.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-129 467.2 321 73.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.2e-129 467.2 336 71.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-129 466.8 363 67.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.6e-129 466.8 333 72.4
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.6e-129 466.8 360 68.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-129 466.5 348 69.3
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-129 466.5 321 73.2
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.1e-129 466.5 348 69.3
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.1e-129 466.5 336 71.7
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.6e-129 465.7 322 73.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-129 465.7 352 69.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.6e-129 465.7 322 73.3
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.6e-129 465.7 310 74.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.6e-129 465.7 310 74.5
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.7e-129 465.3 321 72.9
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.0e-129 464.5 347 70.0
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-128 463.4 348 69.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.8e-128 463.4 338 71.0
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.0e-128 462.6 321 73.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.0e-128 462.6 321 73.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.0e-128 462.6 307 74.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-127 460.3 347 68.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.8e-126 456.1 299 75.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.8e-126 456.1 299 75.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-126 455.7 300 75.7
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.4e-125 451.8 299 75.3
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.4e-125 451.8 299 75.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 5.4e-125 451.8 298 75.8
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 5.4e-125 451.8 340 69.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.2e-124 450.7 313 73.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.7e-124 448.0 324 70.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-122 443.0 373 64.1
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.5e-122 443.0 405 60.0
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.6e-121 440.3 350 67.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.6e-121 440.3 284 77.5
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.1e-121 439.9 284 77.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.0e-121 438.0 328 68.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 5.2e-120 435.3 338 67.8
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.7e-118 429.1 323 69.3
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 7.8e-116 421.4 320 68.1
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-115 420.6 301 72.1
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.5e-114 416.4 280 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.5e-106 390.6 255 80.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.3e-104 383.3 289 64.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.3e-94 350.9 222 79.7
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.7e-94 350.5 238 75.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-93 347.4 248 73.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.6e-75 285.4 307 51.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 3.3e-66 256.5 150 84.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-65 254.2 169 76.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.0e-64 249.6 258 54.7
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.7e-49 199.9 165 61.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.3e-43 180.6 113 77.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.9e-38 163.7 283 37.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.1e-36 157.5 177 52.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.1e-36 157.5 169 53.8
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.1e-36 157.5 169 53.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.7e-36 156.4 111 69.4
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.3e-24 116.3 99 59.6
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 9.1e-24 115.5 99 59.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 9.1e-24 115.5 99 59.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.7e-23 114.0 95 61.1
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 5.9e-23 112.8 99 58.6
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.5e-22 109.0 103 55.3
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.5e-21 108.2 104 52.9
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.6e-20 104.8 103 53.4
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 9.1e-16 89.0 49 87.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.5e-14 82.8 70 68.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 7.2e-13 79.3 64 64.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.6e-12 77.0 67 64.2


User provided reference genes

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