Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.6e-94 349.4 173 100.0
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-68 261.2 184 73.4
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-67 258.5 217 64.5
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.4e-67 257.7 180 73.9
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.2e-66 255.0 217 63.1
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.2e-65 253.4 217 63.1
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.9e-63 246.1 177 71.8
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-58 230.3 202 62.4
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.5e-58 228.0 217 59.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-55 219.9 176 66.5
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.3e-53 211.5 188 62.2
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.9e-51 205.7 143 72.7
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.5e-50 202.6 182 62.1
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-49 199.5 159 67.3
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 1.4e-32 143.7 113 63.7
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 2.6e-28 129.4 93 73.1
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-27 127.5 103 67.0
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 9.4e-18 94.4 51 84.3
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 9.8e-15 84.3 198 31.8
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 9.8e-15 84.3 198 31.8
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.1e-13 80.9 224 29.9
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.4e-13 80.5 197 28.9
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.4e-13 79.7 199 29.1
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.4e-13 79.7 197 29.4
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.4e-13 79.7 197 29.4
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 4.1e-13 79.0 192 32.3
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 4.1e-13 79.0 188 34.0
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 4.1e-13 79.0 197 28.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 5.4e-13 78.6 205 29.8
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 5.4e-13 78.6 173 32.4
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 5.4e-13 78.6 198 30.8
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 7.0e-13 78.2 192 31.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 9.1e-13 77.8 197 29.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.2e-12 77.4 180 30.0
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.2e-12 77.4 198 29.3
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.6e-12 77.0 203 28.1
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.6e-12 77.0 203 28.1
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.6e-12 77.0 187 29.4
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.6e-12 77.0 197 29.9
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.6e-12 77.0 197 28.4
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.0e-12 76.6 194 29.9
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.0e-12 76.6 199 28.6
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.0e-12 76.6 224 27.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.7e-12 76.3 188 31.4
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.7e-12 76.3 173 31.2
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.7e-12 76.3 198 29.3
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.7e-12 76.3 198 29.8
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.7e-12 76.3 213 29.1
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 2.7e-12 76.3 198 29.8
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.5e-12 75.9 197 29.9
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 4.5e-12 75.5 188 31.4
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 4.5e-12 75.5 171 30.4
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 4.5e-12 75.5 173 31.2
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 4.5e-12 75.5 173 31.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 5.9e-12 75.1 202 27.7
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 5.9e-12 75.1 188 30.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 5.9e-12 75.1 190 28.9
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 7.7e-12 74.7 188 29.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 7.7e-12 74.7 180 30.0
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 7.7e-12 74.7 213 28.6
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 7.7e-12 74.7 198 31.8
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 7.7e-12 74.7 197 28.4
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 7.7e-12 74.7 203 26.1
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.0e-11 74.3 188 29.8
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.0e-11 74.3 192 29.7
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-11 74.3 204 28.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.3e-11 73.9 213 28.2
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.3e-11 73.9 180 30.6
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.3e-11 73.9 204 27.9
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.7e-11 73.6 173 31.2
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.7e-11 73.6 201 29.9
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.7e-11 73.6 198 29.8
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.7e-11 73.6 203 27.6
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 2.2e-11 73.2 188 31.9
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.2e-11 73.2 197 27.9
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.9e-11 72.8 188 31.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 2.9e-11 72.8 188 30.3
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.9e-11 72.8 198 29.3
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 3.8e-11 72.4 222 29.7
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 5.0e-11 72.0 173 30.6
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 5.0e-11 72.0 197 29.9
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 5.0e-11 72.0 173 31.2
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 6.5e-11 71.6 200 29.5
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 6.5e-11 71.6 168 31.5
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 6.5e-11 71.6 190 29.5
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 6.5e-11 71.6 199 30.2
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 8.5e-11 71.2 173 30.6
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 8.5e-11 71.2 173 30.6
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 8.5e-11 71.2 173 30.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.1e-10 70.9 183 31.7
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.5e-10 70.5 173 29.5
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.5e-10 70.5 173 30.6
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.9e-10 70.1 197 29.9
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.9e-10 70.1 197 29.9
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.9e-10 70.1 197 29.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.5e-10 69.7 167 31.7
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.5e-10 69.7 222 27.9
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 2.5e-10 69.7 200 29.5
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 2.5e-10 69.7 173 30.1
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.5e-10 69.7 191 29.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 2.5e-10 69.7 175 30.3
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.5e-10 69.7 173 30.6
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.5e-10 69.7 220 28.6
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 3.2e-10 69.3 222 28.4
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 4.2e-10 68.9 185 28.6
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 4.2e-10 68.9 173 30.6
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.5e-10 68.6 176 29.5
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 7.2e-10 68.2 204 27.5
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.2e-09 67.4 210 27.6
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-09 67.4 184 27.2
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.6e-09 67.0 238 25.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.1e-09 66.6 177 28.2
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.6e-09 65.9 235 26.0
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 4.7e-09 65.5 174 28.7
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 6.1e-09 65.1 71 47.9
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.3e-08 63.2 174 27.0
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.3e-08 63.2 160 28.8
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 5.2e-08 62.0 179 27.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 8.8e-08 61.2 165 28.5
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.2e-07 60.8 174 26.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.4e-07 59.3 186 27.4
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 4.4e-07 58.9 175 26.9
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 5.7e-07 58.5 152 29.6
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 7.5e-07 58.2 192 25.0
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 7.5e-07 58.2 39 71.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 7.5e-07 58.2 187 25.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.3e-06 57.4 170 27.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.8e-06 56.2 87 37.9
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 4.9e-06 55.5 93 36.6


User provided reference genes

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