Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_11150 Physcomitrium patens HOM05D001816 ORTHO05D002001 1.5e-116 422.9 225 100.0
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.1e-69 265.8 222 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 4.0e-45 185.7 218 45.9
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 2.0e-44 183.3 219 45.2
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.0e-43 181.0 218 45.0
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 4.5e-36 155.6 219 39.3
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 5.9e-36 155.2 220 41.4
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 2.2e-35 153.3 220 40.5
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.8e-35 152.5 220 39.1
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 3.8e-35 152.5 219 39.3
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 8.4e-35 151.4 218 37.6
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 1.9e-34 150.2 220 38.6
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 2.5e-34 149.8 220 38.2
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 2.5e-34 149.8 220 38.2
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 2.5e-34 149.8 220 38.2
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 2.5e-34 149.8 220 38.2
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 3.2e-34 149.4 220 38.2
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 3.2e-34 149.4 220 38.2
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.2e-34 149.4 220 38.2
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 5.5e-34 148.7 220 38.2
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.5e-34 148.7 220 38.2
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 5.5e-34 148.7 220 40.5
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 7.2e-34 148.3 220 37.7
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 9.3e-34 147.9 219 39.3
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-33 146.7 220 37.7
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.7e-33 146.4 219 38.8
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 4.6e-33 145.6 219 38.4
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 6.1e-33 145.2 220 36.8
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 6.1e-33 145.2 220 38.6
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 7.9e-33 144.8 220 38.2
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 7.9e-33 144.8 219 38.8
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 7.9e-33 144.8 219 37.9
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 7.9e-33 144.8 220 38.6
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.0e-32 144.4 220 37.7
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.0e-32 144.4 218 37.2
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 1.8e-32 143.7 220 37.7
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.8e-32 143.7 219 37.4
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.3e-32 143.3 220 37.3
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 2.3e-32 143.3 219 38.4
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.3e-32 143.3 219 36.5
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 3.0e-32 142.9 220 40.9
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 3.9e-32 142.5 219 37.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 5.1e-32 142.1 219 37.4
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 5.1e-32 142.1 220 39.1
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 5.1e-32 142.1 219 37.9
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 6.7e-32 141.7 220 38.6
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 6.7e-32 141.7 219 37.0
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 8.7e-32 141.4 220 36.8
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 8.7e-32 141.4 219 38.4
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.5e-31 140.6 220 36.8
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.5e-31 140.6 218 39.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.9e-31 140.2 219 37.0
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 1.9e-31 140.2 219 37.0
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 2.5e-31 139.8 241 35.3
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 2.5e-31 139.8 220 37.7
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 3.3e-31 139.4 219 37.0
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 4.3e-31 139.0 219 37.9
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 4.3e-31 139.0 220 38.6
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 4.3e-31 139.0 221 38.5
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 5.7e-31 138.7 220 38.2
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 5.7e-31 138.7 219 35.6
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 7.4e-31 138.3 219 36.5
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 7.4e-31 138.3 220 37.7
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 7.4e-31 138.3 220 37.3
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 9.7e-31 137.9 220 37.7
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.3e-30 137.5 219 36.1
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.3e-30 137.5 220 38.2
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 2.2e-30 136.7 219 36.5
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.2e-30 136.7 220 38.2
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.2e-30 136.7 220 38.2
Cpa.g.c28071.1 Carica papaya HOM05D001816 ORTHO05D002001 2.8e-30 136.3 220 34.5
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 2.8e-30 136.3 218 37.6
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.8e-30 135.6 220 37.3
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 4.8e-30 135.6 220 35.9
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.8e-30 135.6 223 37.2
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.8e-30 135.6 220 37.7
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 4.8e-30 135.6 220 37.3
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 6.3e-30 135.2 220 36.4
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 6.3e-30 135.2 220 37.3
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 6.3e-30 135.2 218 36.7
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 6.3e-30 135.2 219 35.6
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-29 134.4 220 36.8
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 1.4e-29 134.0 219 37.0
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 2.4e-29 133.3 220 35.5
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.4e-29 133.3 223 37.2
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.4e-29 133.3 220 37.3
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 3.1e-29 132.9 220 34.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.1e-29 132.9 223 36.8
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 3.1e-29 132.9 220 38.6
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 4.1e-29 132.5 218 37.2
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 5.3e-29 132.1 220 36.8
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 6.9e-29 131.7 239 34.3
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 6.9e-29 131.7 221 38.0
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 6.9e-29 131.7 220 35.5
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 6.9e-29 131.7 219 36.1
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 9.0e-29 131.3 220 36.4
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 9.0e-29 131.3 229 34.1
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 1.2e-28 131.0 227 37.9
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.2e-28 131.0 227 37.9
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.5e-28 130.6 218 37.6
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.0e-28 130.2 221 38.5
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 2.0e-28 130.2 218 35.8
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 2.0e-28 130.2 220 36.4
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 2.0e-28 130.2 220 36.4
MELO3C027308.2 Cucumis melo HOM05D001816 ORTHO05D002001 2.6e-28 129.8 221 36.7
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 4.5e-28 129.0 221 36.7
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 5.9e-28 128.6 220 37.3
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 5.9e-28 128.6 200 37.5
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 7.7e-28 128.3 220 35.9
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 7.7e-28 128.3 220 35.9
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.7e-27 127.1 223 35.9
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 2.2e-27 126.7 221 35.3
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.2e-27 126.7 223 33.2
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 3.8e-27 125.9 219 36.1
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 3.8e-27 125.9 220 35.0
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 6.5e-27 125.2 218 35.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.4e-26 124.0 241 32.0
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.9e-26 123.6 185 37.3
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.2e-26 122.9 218 34.9
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 3.2e-26 122.9 220 34.5
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 5.5e-26 122.1 218 34.9
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 5.5e-26 122.1 223 34.1
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.6e-25 120.6 220 34.5
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 7.9e-25 118.2 220 32.3
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.9e-25 118.2 204 34.3
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.0e-24 117.9 263 30.0
Cc11_g00080 Coffea canephora HOM05D001816 ORTHO05D002001 1.4e-24 117.5 220 35.5
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.4e-24 117.5 186 37.6
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.4e-24 117.5 220 34.5
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.5e-23 114.0 273 28.9
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.8e-22 109.0 238 31.5
SEGI_10768 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 6.3e-22 108.6 108 51.9
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 8.2e-22 108.2 188 36.7
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 1.5e-20 104.0 218 34.9
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 2.0e-20 103.6 219 32.9
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-18 97.1 204 33.3
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 2.1e-17 93.6 145 37.2
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 4.7e-17 92.4 218 30.7
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 2.6e-15 86.7 220 30.0
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 2.6e-15 86.7 220 30.0
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 2.6e-15 86.7 220 30.0
FAN22G1947 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.4e-15 85.9 135 37.0
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 9.7e-15 84.7 216 29.6
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.3e-14 84.3 222 28.8
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.7e-14 84.0 79 51.9
Sp1g37050 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.5e-12 76.3 127 35.4
Cpa.g.c33436.1 Carica papaya HOM05D001816 ORTHO05D002001 4.2e-10 69.3 135 31.1
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-09 67.0 170 28.2


User provided reference genes

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