Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.2e-250 869.4 435 100.0
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.3e-105 386.7 435 53.1
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.7e-96 354.8 426 53.1
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.8e-42 177.2 362 37.6
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.6e-42 176.8 367 38.4
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.8e-23 113.6 208 36.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.6e-21 108.2 377 28.6
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.6e-21 108.2 370 30.0
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.5e-19 100.9 373 27.9
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 3.3e-19 100.5 380 29.5
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.6e-18 98.2 400 27.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 4.8e-18 96.7 209 32.1
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 6.2e-18 96.3 388 27.1
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.8e-17 94.7 363 26.7
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.8e-17 94.7 363 26.4
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.4e-17 94.4 187 33.2
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.1e-17 94.0 360 27.2
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.0e-17 93.6 422 24.9
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 2.6e-16 90.9 359 25.6
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 4.5e-16 90.1 383 28.5
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 5.8e-16 89.7 378 27.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 7.6e-16 89.4 185 31.9
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-15 89.0 381 27.3
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.3e-15 88.6 178 34.3
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.7e-15 88.2 184 29.3
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 3.8e-15 87.0 211 32.7
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-14 85.5 396 24.7
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.4e-14 85.1 190 30.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.4e-14 85.1 204 29.4
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.9e-14 84.7 380 25.5
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.9e-14 84.7 362 27.3
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.5e-14 84.3 177 30.5
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 3.2e-14 84.0 360 26.9
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 4.2e-14 83.6 215 28.4
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 4.2e-14 83.6 433 25.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.2e-14 83.6 383 26.6
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 5.5e-14 83.2 195 29.7
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.5e-14 83.2 378 27.5
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 7.1e-14 82.8 232 27.6
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.3e-14 82.4 400 24.5
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.2e-13 82.0 371 25.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.2e-13 82.0 179 31.8
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.6e-13 81.6 204 30.4
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.6e-13 81.6 183 32.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.1e-13 81.3 402 25.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.7e-13 80.9 386 24.9
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.7e-13 80.9 217 29.5
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 3.5e-13 80.5 376 25.3
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.5e-13 80.5 64 57.8
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.5e-13 80.5 64 57.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 3.5e-13 80.5 420 26.2
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-13 80.1 384 24.0
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 6.0e-13 79.7 379 26.9
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 7.9e-13 79.3 190 32.1
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.0e-12 79.0 192 30.7
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.3e-12 78.6 236 28.0
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.3e-12 78.6 382 27.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.8e-12 78.2 195 29.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.8e-12 78.2 181 30.4
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 1.8e-12 78.2 363 27.0
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 3.0e-12 77.4 184 29.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.0e-12 77.4 247 29.6
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 5.1e-12 76.6 360 26.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 5.1e-12 76.6 362 26.8
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 6.7e-12 76.3 387 25.1
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.7e-12 76.3 371 26.1
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.7e-12 76.3 425 24.9
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.1e-11 75.5 282 26.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.1e-11 75.5 282 26.6
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-11 75.5 186 29.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.1e-11 75.5 373 27.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.5e-11 75.1 178 28.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.9e-11 74.7 245 28.6
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-11 74.7 177 30.5
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.5e-11 74.3 206 28.2
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.3e-11 73.9 182 29.1
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 3.3e-11 73.9 357 24.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 4.3e-11 73.6 248 26.6
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 4.3e-11 73.6 377 28.1
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 4.3e-11 73.6 175 31.4
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 7.4e-11 72.8 240 27.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 7.4e-11 72.8 408 24.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 9.6e-11 72.4 199 26.1
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.3e-10 72.0 203 29.1
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.3e-10 72.0 199 27.1
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.3e-10 72.0 199 27.1
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.3e-10 72.0 199 27.1
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.6e-10 71.6 185 30.3
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.1e-10 71.2 199 27.1
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.1e-10 71.2 206 28.6
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.1e-10 71.2 202 29.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-10 71.2 337 26.4
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.8e-10 70.9 359 25.9
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.7e-10 70.5 182 30.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.7e-10 70.5 372 27.2
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 4.8e-10 70.1 182 29.7
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 4.8e-10 70.1 207 29.5
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 6.3e-10 69.7 180 30.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.3e-10 69.7 210 27.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.1e-09 68.9 200 29.0
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.1e-09 68.9 376 23.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.4e-09 68.6 258 26.0
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-09 68.6 61 44.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.4e-09 68.6 422 24.6
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.8e-09 68.2 219 26.0
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.8e-09 68.2 161 31.7
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.4e-09 67.8 354 24.0
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.4e-09 67.8 371 22.9
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.4e-09 67.8 377 23.6
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.4e-09 67.8 177 29.4
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 4.1e-09 67.0 104 38.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 6.9e-09 66.2 207 27.5
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.2e-08 65.5 237 27.4
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.5e-08 65.1 207 27.5
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 3.4e-08 63.9 358 22.1
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 5.9e-08 63.2 58 43.1
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 7.6e-08 62.8 174 26.4
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.0e-07 62.4 427 24.8
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.3e-07 62.0 396 23.5
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 6.5e-07 59.7 369 22.8
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.1e-06 58.9 209 23.9
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.1e-06 58.9 342 24.0
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-06 58.5 363 21.5
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.9e-06 58.2 186 25.3


User provided reference genes

Program Settings