Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.7e-76 288.1 145 100.0
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.9e-25 118.6 119 62.2
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.1e-24 117.1 119 61.3
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 3.1e-22 109.0 146 51.4
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 4.0e-22 108.6 133 54.9
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 5.3e-22 108.2 144 51.4
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 9.0e-22 107.5 119 57.1
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.2e-21 107.1 132 54.5
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.2e-21 107.1 119 56.3
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.2e-21 107.1 119 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.5e-21 106.7 119 56.3
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.5e-21 106.7 119 56.3
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.5e-21 106.7 119 57.1
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.6e-21 105.9 119 57.1
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.5e-21 105.1 119 57.1
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.5e-21 105.1 119 57.1
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 5.8e-21 104.8 119 56.3
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.8e-21 104.8 119 56.3
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 7.6e-21 104.4 128 54.7
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.6e-21 104.4 132 53.0
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.6e-21 104.4 132 53.0
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 7.6e-21 104.4 132 53.0
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.0e-20 104.0 119 56.3
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.7e-20 103.2 132 53.0
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.7e-20 103.2 132 53.0
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.9e-20 102.4 128 53.1
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 2.9e-20 102.4 144 49.3
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 3.8e-20 102.1 132 51.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 3.8e-20 102.1 132 52.3
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.8e-20 102.1 132 52.3
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 3.8e-20 102.1 119 56.3
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 4.9e-20 101.7 119 54.6
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.9e-20 101.7 123 54.5
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 4.9e-20 101.7 119 55.5
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 4.9e-20 101.7 132 52.3
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 6.5e-20 101.3 132 52.3
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 6.5e-20 101.3 119 54.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 6.5e-20 101.3 144 48.6
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 6.5e-20 101.3 102 58.8
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 8.4e-20 100.9 119 55.5
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 8.4e-20 100.9 119 55.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 8.4e-20 100.9 119 53.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 8.4e-20 100.9 119 55.5
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 8.4e-20 100.9 102 58.8
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 8.4e-20 100.9 144 49.3
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 8.4e-20 100.9 132 52.3
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 8.4e-20 100.9 132 51.5
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.1e-19 100.5 128 52.3
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.1e-19 100.5 144 49.3
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.1e-19 100.5 132 51.5
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.1e-19 100.5 132 52.3
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.9e-19 99.8 128 51.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.9e-19 99.8 132 51.5
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.9e-19 99.8 128 51.6
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.9e-19 99.8 128 51.6
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.9e-19 99.8 128 51.6
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 51.5
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.5e-19 99.4 143 46.9
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 2.5e-19 99.4 132 50.8
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 2.5e-19 99.4 119 54.6
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.2e-19 99.0 128 51.6
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 4.2e-19 98.6 119 53.8
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 5.5e-19 98.2 119 52.1
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.5e-19 98.2 119 53.8
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.5e-19 98.2 119 53.8
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 7.1e-19 97.8 144 47.2
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 9.3e-19 97.4 132 49.2
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.2e-18 97.1 132 50.0
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.2e-18 97.1 119 52.9
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-18 96.7 119 52.9
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-18 96.7 119 52.9
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-18 96.7 141 49.6
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-18 96.7 141 49.6
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.6e-18 96.7 128 50.8
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.1e-18 96.3 119 52.9
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 3.5e-18 95.5 119 52.9
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 3.5e-18 95.5 132 49.2
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 3.5e-18 95.5 128 50.0
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.6e-18 95.1 84 60.7
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 6.0e-18 94.7 71 66.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 7.9e-18 94.4 132 47.7
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.3e-17 93.6 136 50.7
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 1.3e-17 93.6 119 51.3
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.8e-17 93.2 126 49.2
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 2.3e-17 92.8 119 49.6
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 3.0e-17 92.4 132 47.7
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 3.0e-17 92.4 141 48.9
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 3.0e-17 92.4 132 47.0
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 3.0e-17 92.4 132 48.5
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 5.1e-17 91.7 132 47.7
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-16 90.5 89 58.4
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.1e-16 90.5 89 58.4
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.1e-16 90.5 119 48.7
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.5e-16 90.1 132 46.2
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.5e-16 90.1 132 46.2
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.5e-16 90.1 119 49.6
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.5e-16 90.1 119 49.6
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.9e-16 89.7 132 46.2
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.9e-16 89.7 132 46.2
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 3.3e-16 89.0 119 47.9
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 6.3e-15 84.7 118 45.8
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 8.2e-15 84.3 118 48.3
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 8.2e-15 84.3 132 44.7
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 1.4e-14 83.6 152 44.1
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.4e-14 83.6 113 49.6
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.1e-14 82.4 58 67.2
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 7.7e-13 77.8 64 60.9
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.7e-12 76.6 49 77.6
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.2e-12 76.3 87 47.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 6.5e-12 74.7 62 62.9
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 8.5e-12 74.3 60 63.3
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 8.5e-12 74.3 49 73.5
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.5e-11 72.8 62 62.9
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.2e-11 72.4 52 69.2
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.5e-11 71.6 47 74.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.2e-10 70.5 126 41.3
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.6e-10 70.1 143 40.6
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 4.6e-10 68.6 60 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.0e-08 63.2 47 70.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 2.5e-08 62.8 135 37.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 8.2e-07 57.8 95 44.2


User provided reference genes

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