Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.4e-51 203.8 101 100.0
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.1e-37 158.3 112 74.1
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.9e-37 157.1 114 71.9
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-36 155.6 114 70.2
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.0e-36 155.6 114 70.2
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.6e-36 153.7 114 70.2
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.6e-36 153.7 114 70.2
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.4e-35 150.2 109 71.6
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-31 139.0 101 70.3
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 5.9e-28 127.5 103 67.0
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-27 125.6 94 71.3
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.0e-27 124.4 99 67.7
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.0e-27 124.4 99 67.7
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.4e-26 120.2 101 66.3
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 1.8e-21 105.9 66 81.8
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 5.3e-21 104.4 89 59.6
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 1.3e-19 99.8 101 55.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.5e-10 69.7 92 41.3
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 2.7e-09 65.5 109 34.9
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.7e-09 65.5 109 34.9
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.7e-09 65.5 109 34.9
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.7e-09 65.5 109 34.9
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.6e-09 65.1 110 35.5
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.4e-08 63.2 92 38.0
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.8e-08 62.8 112 35.7
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.3e-08 62.4 104 34.6
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.3e-08 62.4 104 34.6
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 3.0e-08 62.0 112 34.8
Pp3c11_8200 Physcomitrium patens HOM05D004663 ORTHO05D308975 3.0e-08 62.0 30 90.0
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 3.0e-08 62.0 102 36.3
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 4.0e-08 61.6 103 35.9
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 4.0e-08 61.6 103 36.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 4.0e-08 61.6 113 35.4
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 4.0e-08 61.6 99 36.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 5.2e-08 61.2 112 35.7
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 6.7e-08 60.8 110 35.5
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.7e-08 60.8 103 36.9
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 6.7e-08 60.8 102 34.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 6.7e-08 60.8 107 33.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 6.7e-08 60.8 102 35.3
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 6.7e-08 60.8 107 33.6
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 8.8e-08 60.5 107 33.6
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 8.8e-08 60.5 92 39.1
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 8.8e-08 60.5 102 35.3
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.1e-07 60.1 92 38.0
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.1e-07 60.1 92 38.0
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.5e-07 59.7 92 37.0
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.5e-07 59.7 96 37.5
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 1.5e-07 59.7 107 34.6
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.5e-07 59.7 92 39.1
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.5e-07 59.7 92 39.1
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.5e-07 59.7 102 34.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.0e-07 59.3 92 37.0
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.0e-07 59.3 107 35.5
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 2.0e-07 59.3 101 36.6
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.0e-07 59.3 107 34.6
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.0e-07 59.3 110 36.4
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.6e-07 58.9 105 35.2
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 2.6e-07 58.9 94 36.2
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.6e-07 58.9 119 31.9
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.6e-07 58.9 103 35.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.6e-07 58.9 92 37.0
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.6e-07 58.9 102 33.3
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 3.3e-07 58.5 93 35.5
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 3.3e-07 58.5 103 35.9
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 3.3e-07 58.5 102 34.3
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.3e-07 58.5 102 34.3
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 3.3e-07 58.5 92 35.9
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.3e-07 58.5 103 35.9
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 4.4e-07 58.2 103 35.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 4.4e-07 58.2 92 37.0
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 4.4e-07 58.2 102 33.3
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 4.4e-07 58.2 103 35.9
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 4.4e-07 58.2 93 36.6
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 5.7e-07 57.8 92 35.9
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 5.7e-07 57.8 92 35.9
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 5.7e-07 57.8 92 35.9
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 5.7e-07 57.8 102 34.3
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 7.5e-07 57.4 97 36.1
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 7.5e-07 57.4 92 34.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 7.5e-07 57.4 102 33.3
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 7.5e-07 57.4 111 36.0
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 7.5e-07 57.4 91 35.2
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 7.5e-07 57.4 92 37.0
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.5e-07 57.4 92 37.0
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.5e-07 57.4 92 37.0
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 7.5e-07 57.4 39 71.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 7.5e-07 57.4 92 35.9
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 9.7e-07 57.0 105 34.3
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.3e-06 56.6 100 36.0
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-06 56.6 104 34.6
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-06 56.6 104 34.6
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-06 56.6 93 35.5
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-06 56.6 93 35.5
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-06 56.6 93 35.5
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.3e-06 56.6 92 34.8
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.3e-06 56.6 92 35.9
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.3e-06 56.6 92 37.0
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.3e-06 56.6 102 33.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.3e-06 56.6 92 37.0
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.3e-06 56.6 94 36.2
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.7e-06 56.2 92 35.9
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-06 56.2 101 34.7
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.7e-06 56.2 103 30.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 2.2e-06 55.8 95 34.7
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.2e-06 55.8 102 33.3
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 2.2e-06 55.8 92 35.9
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.2e-06 55.8 92 34.8
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 2.8e-06 55.5 90 36.7
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 3.7e-06 55.1 92 34.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 3.7e-06 55.1 92 35.9
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 3.7e-06 55.1 103 34.0
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 3.7e-06 55.1 90 35.6
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 4.8e-06 54.7 92 33.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 6.3e-06 54.3 97 34.0
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 6.3e-06 54.3 102 32.4
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 6.3e-06 54.3 92 35.9
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 6.3e-06 54.3 92 33.7
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 8.2e-06 53.9 107 31.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 8.2e-06 53.9 103 34.0
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 8.2e-06 53.9 103 35.0


User provided reference genes

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