Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 4241.4 2131 100.0
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2817.3 2143 68.8
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2809.6 2135 68.9
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2379.0 2186 58.9
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2367.4 2168 59.0
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 1998.4 2245 50.3
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1725.7 2157 46.2
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1721.4 2149 46.3
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1535.8 2161 43.8
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1384.8 2138 40.7
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1226.5 2160 37.1
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1225.3 2128 37.7
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1224.9 2140 37.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1223.4 2155 36.6
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1219.5 2123 37.3
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1218.4 2111 36.6
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1218.0 2180 37.2
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1216.1 2150 36.6
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1215.3 2183 36.4
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1213.7 2107 37.2
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1211.8 2144 36.8
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1207.6 2151 36.7
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1206.4 2141 36.8
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1204.5 2129 36.8
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1203.0 2162 36.2
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1201.8 2155 37.2
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1201.0 2181 37.3
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1198.7 2163 36.8
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1198.3 2125 36.5
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1197.2 2162 36.1
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1196.0 2166 36.8
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 2164 37.3
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 2159 36.5
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1192.6 2128 36.4
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 2147 36.4
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 2137 36.6
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1185.6 2126 36.4
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1185.2 2186 36.8
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1184.5 2139 36.8
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1182.5 2146 35.6
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1182.5 2122 36.2
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1180.6 2135 36.3
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1179.1 2130 37.1
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1177.9 2135 37.0
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1177.2 2171 35.0
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1176.8 2150 36.5
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1175.6 2156 36.1
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1174.8 2167 35.5
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1174.8 2155 36.0
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1171.0 2130 36.5
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1171.0 2159 36.1
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1167.5 2154 36.4
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1166.0 2130 36.7
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1165.6 2137 36.5
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1164.8 2135 36.7
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1162.9 2135 35.8
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1158.7 2128 35.9
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1157.5 2160 35.9
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1153.3 2126 35.6
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1149.4 2141 35.3
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1147.5 2164 35.5
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1147.1 2177 35.3
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 2166 36.1
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 2115 36.3
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1146.0 2112 35.9
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1144.0 2175 34.8
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1142.5 2132 35.6
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1141.7 2167 36.1
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2193 35.1
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2137 35.9
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1136.3 2161 35.4
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1135.6 2124 36.0
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1135.2 2126 36.4
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1133.2 2137 35.7
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1132.9 2140 36.1
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1132.1 2205 35.0
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1132.1 2143 34.7
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1130.9 2166 35.5
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1129.0 2115 35.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1127.9 2165 35.2
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1126.7 2137 35.5
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1124.4 2195 35.0
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1124.4 2128 35.0
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1124.0 2220 34.9
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1120.9 2127 36.0
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1119.0 2168 35.5
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 0.0e+00 1112.8 2603 33.3
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1110.1 2148 35.3
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1108.2 2154 34.7
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1104.4 2168 35.0
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1104.0 2116 36.3
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1102.8 2164 36.0
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1098.2 2124 35.2
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1096.6 2145 35.0
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1094.7 2150 34.8
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1094.0 2157 34.6
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1093.2 2148 34.9
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1093.2 2159 35.5
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1092.4 2125 35.2
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1092.4 2150 35.0
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1089.7 2165 34.8
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1087.8 2212 34.0
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1087.0 2145 34.9
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1085.5 2131 34.5
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.3e-310 1070.8 2150 33.8
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.1e-309 1067.8 2322 33.1
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 5.5e-309 1065.4 2163 34.6
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 1.6e-308 1063.9 2155 34.2
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 6.7e-307 1058.5 2161 34.3
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 2.2e-305 1053.5 2162 33.9
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 2.2e-305 1053.5 2162 33.9
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 2.0e-303 1047.0 2164 33.9
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 4.1e-296 1022.7 2138 34.0
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 2.0e-295 1020.4 2138 34.0
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.3e-294 1017.7 2141 33.5
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 5.0e-294 1015.8 2138 33.2
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 6.5e-294 1015.4 2141 33.5
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 7.2e-293 1011.9 2134 33.6
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.2e-271 941.4 2129 32.9
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 8.9e-259 898.7 2147 31.4
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 4.3e-245 853.2 1492 37.5
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.4e-242 843.2 2114 31.3
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.6e-234 817.4 1774 33.6
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 2.4e-227 794.3 1301 37.6
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 9.3e-216 755.7 1378 36.1
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.9e-213 748.0 1295 38.1
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 3.4e-210 737.3 1301 36.3
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 9.9e-210 735.7 1312 36.7
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.3e-198 698.7 1781 31.8
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.7e-197 693.3 1798 31.2
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 9.0e-195 686.0 1326 35.5
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.5e-181 642.1 1307 34.5
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.2e-175 622.5 1834 29.9
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.3e-172 612.5 1268 34.8
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 3.2e-160 571.2 1407 31.9
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.4e-157 561.2 1997 27.1
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 3.2e-139 501.5 849 37.9
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 4.1e-139 501.1 850 36.9
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.6e-138 499.2 850 36.7
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 2.8e-135 488.4 835 37.8
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 7.5e-133 480.3 1039 34.9
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 2.3e-121 442.2 2342 25.5
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 3.4e-117 428.3 811 35.6
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 5.2e-110 404.4 896 33.7
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 3.1e-102 378.6 850 33.2
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 2.1e-98 365.9 617 37.8
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.8e-95 354.8 268 67.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 5.8e-93 347.8 1289 27.0
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 3.5e-90 338.6 520 40.0
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 3.7e-87 328.6 1942 22.7
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 1.2e-82 313.5 352 46.9
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 4.2e-75 288.5 309 46.3
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 6.9e-70 271.2 345 42.6
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 5.0e-68 265.0 302 46.4
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 8.5e-60 237.7 2198 21.4
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 3.3e-56 225.7 259 44.0
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 1.7e-55 223.4 388 36.1
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.6e-53 216.1 2192 20.1
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 3.3e-48 199.1 381 36.0
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 8.2e-47 194.5 319 39.2
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 5.5e-43 181.8 2183 20.6
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.1e-42 179.9 979 22.5
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 5.7e-40 171.8 2207 20.8
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.4e-38 167.2 2185 20.1
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 3.5e-37 162.5 179 43.6
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 4.5e-37 162.2 477 29.4
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.7e-34 152.1 919 22.4
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 5.9e-29 135.2 142 47.9
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 7.5e-24 118.2 254 32.3
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 4.9e-23 115.5 155 45.2
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 9.2e-22 111.3 80 66.2
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 4.6e-21 109.0 70 68.6
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 7.8e-21 108.2 67 67.2
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 6.8e-17 95.1 148 39.2
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 3.2e-14 86.3 82 48.8
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 1.2e-13 84.3 143 34.3
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 2.0e-13 83.6 251 28.7
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 7.8e-13 81.6 139 35.3
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.9e-12 79.3 116 37.9
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 4.7e-10 72.4 47 70.2
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 8.9e-09 68.2 175 28.6
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 3.7e-07 62.8 40 67.5


User provided reference genes

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