Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 8.2e-79 297.0 148 100.0
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 2.3e-25 119.4 147 53.1
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 1.4e-22 110.2 104 62.5
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 1.2e-18 97.1 97 59.8
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 4.7e-18 95.1 101 55.4
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 8.1e-18 94.4 123 48.8
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 1.1e-17 94.0 99 56.6
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 1.1e-17 94.0 99 57.6
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 1.1e-17 94.0 99 55.6
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 1.4e-17 93.6 99 56.6
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 1.4e-17 93.6 99 56.6
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.4e-17 93.6 98 57.1
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 1.8e-17 93.2 99 56.6
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 1.8e-17 93.2 101 53.5
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 1.8e-17 93.2 99 55.6
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 2.3e-17 92.8 99 55.6
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 2.3e-17 92.8 97 56.7
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 2.3e-17 92.8 97 56.7
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 3.1e-17 92.4 99 54.5
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 3.1e-17 92.4 99 54.5
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 3.1e-17 92.4 98 56.1
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 3.1e-17 92.4 97 56.7
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 3.1e-17 92.4 97 56.7
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 3.1e-17 92.4 97 56.7
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 3.1e-17 92.4 97 56.7
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 3.1e-17 92.4 99 54.5
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 3.1e-17 92.4 98 56.1
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 4.0e-17 92.0 96 57.3
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 4.0e-17 92.0 99 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 5.2e-17 91.7 99 56.6
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 5.2e-17 91.7 101 54.5
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 5.2e-17 91.7 98 55.1
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 5.2e-17 91.7 97 55.7
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 6.8e-17 91.3 99 55.6
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 6.8e-17 91.3 98 57.1
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 6.8e-17 91.3 98 57.1
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 6.8e-17 91.3 97 55.7
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 8.9e-17 90.9 97 55.7
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 8.9e-17 90.9 96 56.2
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 8.9e-17 90.9 97 54.6
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 1.2e-16 90.5 97 55.7
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 1.2e-16 90.5 97 54.6
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 1.2e-16 90.5 97 55.7
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 1.5e-16 90.1 96 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 1.5e-16 90.1 96 56.2
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 1.5e-16 90.1 109 51.4
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 1.5e-16 90.1 97 55.7
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 2.0e-16 89.7 97 55.7
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 2.0e-16 89.7 97 56.7
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 2.0e-16 89.7 97 56.7
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 2.0e-16 89.7 97 54.6
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 2.0e-16 89.7 97 54.6
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 2.6e-16 89.4 97 54.6
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 3.4e-16 89.0 97 54.6
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 3.4e-16 89.0 97 54.6
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 3.4e-16 89.0 97 53.6
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 3.4e-16 89.0 94 56.4
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 3.4e-16 89.0 96 54.2
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 4.4e-16 88.6 94 56.4
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 4.4e-16 88.6 96 55.2
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 4.4e-16 88.6 107 51.4
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 4.4e-16 88.6 96 54.2
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 5.8e-16 88.2 107 51.4
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 7.5e-16 87.8 94 55.3
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 7.5e-16 87.8 99 53.5
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 7.5e-16 87.8 96 54.2
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 9.9e-16 87.4 97 53.6
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 9.9e-16 87.4 94 55.3
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 1.3e-15 87.0 97 53.6
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 3.7e-15 85.5 97 52.6
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 6.4e-15 84.7 119 45.4
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 6.4e-15 84.7 106 50.0
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 1.1e-14 84.0 121 46.3
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 1.9e-14 83.2 99 48.5
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 4.1e-14 82.0 92 55.4
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 2.1e-13 79.7 122 43.4
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 1.0e-12 77.4 105 49.5
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 1.3e-12 77.0 55 76.4
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 3.0e-12 75.9 134 40.3
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 3.9e-12 75.5 73 63.0
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 5.1e-12 75.1 70 64.3
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 5.1e-12 75.1 70 64.3
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 5.1e-12 75.1 88 53.4
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 5.1e-12 75.1 70 64.3
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 6.6e-12 74.7 54 75.9
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 8.6e-12 74.3 53 77.4
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 8.6e-12 74.3 53 77.4
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 8.6e-12 74.3 53 77.4
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 1.5e-11 73.6 54 74.1
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 3.3e-11 72.4 87 50.6
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 9.5e-11 70.9 93 47.3
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 9.5e-11 70.9 54 72.2
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 2.1e-10 69.7 96 44.8
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 5.2e-09 65.1 76 52.6
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 7.6e-08 61.2 82 48.8
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 3.8e-07 58.9 78 46.2
Actinidia31052 Actinidia chinensis HOM05D005208 ORTHO05D006415 4.2e-06 55.5 62 51.6
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 5.4e-06 55.1 93 37.6


User provided reference genes

Program Settings