Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 9.3e-293 1009.6 559 100.0
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 9.3e-192 674.1 568 71.1
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 3.4e-93 346.7 404 47.3
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 4.2e-91 339.7 456 46.1
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.8e-68 263.5 499 35.1
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 3.8e-68 263.5 433 37.6
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 8.4e-68 262.3 490 35.3
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.1e-67 261.9 485 35.7
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 2.5e-67 260.8 406 37.7
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.2e-67 260.4 515 34.6
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 3.2e-67 260.4 422 37.2
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 4.2e-67 260.0 515 33.8
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 4.2e-67 260.0 488 34.2
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 5.5e-67 259.6 419 37.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 7.1e-67 259.2 527 37.4
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 1.2e-66 258.5 509 34.2
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 1.6e-66 258.1 420 36.4
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.6e-66 258.1 492 33.9
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.1e-66 257.7 499 35.7
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 2.7e-66 257.3 489 36.2
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 3.5e-66 256.9 511 34.8
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 3.5e-66 256.9 490 34.1
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 3.5e-66 256.9 423 38.1
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 6.1e-66 256.1 499 35.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 7.9e-66 255.8 415 38.1
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 7.9e-66 255.8 482 36.5
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.0e-65 255.4 487 36.1
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 1.3e-65 255.0 503 35.4
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 1.3e-65 255.0 482 38.0
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.3e-65 255.0 474 36.5
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.8e-65 254.6 474 36.3
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.8e-65 254.6 413 37.8
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.3e-65 254.2 499 36.9
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 3.9e-65 253.4 412 37.1
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 5.1e-65 253.1 497 34.6
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 5.1e-65 253.1 487 34.7
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 6.7e-65 252.7 535 34.4
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 8.7e-65 252.3 512 34.2
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 1.1e-64 251.9 429 37.8
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.1e-64 251.9 482 36.5
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.5e-64 251.5 495 35.2
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.5e-64 251.5 494 36.0
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.5e-64 251.5 474 34.8
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.5e-64 251.5 419 35.8
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 1.9e-64 251.1 493 37.5
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.9e-64 251.1 406 37.9
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 2.5e-64 250.8 505 36.8
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.5e-64 250.8 474 35.9
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.5e-64 250.8 474 35.9
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 4.3e-64 250.0 474 34.8
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 4.3e-64 250.0 509 35.8
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 5.7e-64 249.6 504 32.7
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 5.7e-64 249.6 504 32.7
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 7.4e-64 249.2 496 34.5
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 9.7e-64 248.8 539 32.8
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.3e-63 248.4 406 35.7
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.3e-63 248.4 419 34.6
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.6e-63 248.1 466 37.3
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 2.8e-63 247.3 478 35.8
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 3.7e-63 246.9 507 32.5
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 4.8e-63 246.5 476 38.0
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 4.8e-63 246.5 432 36.8
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 8.2e-63 245.7 462 34.6
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 1.8e-62 244.6 552 31.9
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 3.1e-62 243.8 519 35.1
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.1e-62 243.4 412 36.2
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.1e-62 243.4 492 36.2
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 5.3e-62 243.0 524 32.8
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 6.9e-62 242.7 400 35.5
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 6.9e-62 242.7 474 36.3
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.2e-61 241.9 389 38.3
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.5e-61 241.5 423 36.6
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.5e-61 241.5 494 33.4
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 3.4e-61 240.4 492 33.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 3.4e-61 240.4 484 34.3
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 3.4e-61 240.4 472 39.6
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 4.5e-61 240.0 464 34.3
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 5.9e-61 239.6 491 36.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 7.7e-61 239.2 491 33.4
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 7.7e-61 239.2 434 34.1
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.3e-60 238.4 491 36.3
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 1.7e-60 238.0 466 34.1
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.7e-60 238.0 376 39.1
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 3.8e-60 236.9 466 34.1
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 3.8e-60 236.9 466 34.1
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 3.8e-60 236.9 489 33.5
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 5.0e-60 236.5 442 35.1
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.1e-59 235.3 411 35.5
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 1.9e-59 234.6 575 31.0
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.6e-58 231.5 495 35.6
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 2.7e-58 230.7 516 32.8
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.6e-58 229.9 499 34.9
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 4.6e-58 229.9 464 35.6
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 1.0e-57 228.8 437 34.1
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 1.4e-57 228.4 505 33.5
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 3.7e-55 220.3 540 30.9
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 4.1e-54 216.9 521 31.3
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.9e-52 210.7 485 33.4
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 3.1e-46 190.7 247 41.7
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.1e-43 182.2 475 30.5
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 4.2e-43 180.3 160 52.5
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 3.4e-32 144.1 314 31.5
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.4e-30 138.7 119 52.1
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 2.7e-29 134.4 119 53.8
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.2e-28 131.3 188 38.8
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 1.1e-27 129.0 292 31.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 8.6e-20 102.8 77 58.4
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.1e-19 102.4 174 44.8
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.8e-18 97.8 224 34.4
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.2e-17 93.6 165 35.2
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 7.5e-16 89.7 264 28.0
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 9.8e-16 89.4 241 30.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 3.7e-15 87.4 110 44.5
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 4.9e-15 87.0 229 30.1
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 3.2e-06 57.8 65 43.1


User provided reference genes

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