Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 4403.6 2219 100.0
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 3325.4 2225 76.5
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2398.6 2186 58.9
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2258.8 2230 55.3
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2197.5 2152 55.5
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 2028.8 2306 50.3
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1692.6 2224 44.9
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1691.4 2191 45.2
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1576.2 2228 43.3
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1357.8 2237 38.5
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1246.9 2217 36.8
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1238.0 2206 36.9
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1231.5 2215 36.3
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1224.5 2168 36.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1219.1 2198 36.2
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1217.2 2184 37.0
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1217.2 2193 36.7
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1216.1 2193 36.3
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1214.5 2214 36.6
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1211.4 2203 35.7
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1211.1 2206 36.5
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1210.7 2197 35.6
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1210.7 2197 35.6
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1210.7 2201 35.9
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1209.1 2227 35.2
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1208.0 2220 35.4
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1207.2 2211 36.5
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1203.3 2214 36.7
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1203.3 2230 35.7
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1203.3 2205 36.3
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1202.6 2202 36.4
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1201.4 2198 36.2
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1199.5 2203 36.0
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1199.1 2227 36.1
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1196.8 2218 35.8
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1196.0 2199 35.7
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1195.6 2197 36.1
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1193.7 2216 35.8
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1189.9 2190 36.0
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 2157 36.6
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 2211 36.0
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1188.3 2218 35.4
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1187.6 2218 35.1
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1186.8 2202 35.3
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1185.6 2206 35.6
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1185.2 2124 37.5
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1184.9 2202 36.3
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1184.5 2186 36.0
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 2201 35.9
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 2207 36.2
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1181.4 2208 35.7
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1173.7 2210 36.1
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1173.7 2210 35.8
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1169.8 2209 35.5
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1168.3 2217 35.2
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1167.1 2188 35.0
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1166.8 2205 35.7
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1164.4 2212 35.4
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1160.6 2219 35.3
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1159.8 2215 35.6
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1159.4 2228 34.6
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1159.1 2224 34.9
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1159.1 2186 36.0
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1158.7 2226 34.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1156.7 2210 34.8
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1155.2 2221 35.7
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1154.0 2207 35.0
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1153.7 2214 35.4
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1150.6 2187 35.3
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 2202 35.1
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1149.0 2202 34.3
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1149.0 2187 35.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1147.1 2212 34.8
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 2207 35.3
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1144.8 2206 36.1
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1141.3 2197 34.9
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 2204 35.4
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 2246 34.8
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2192 35.5
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 0.0e+00 1137.1 2628 32.4
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1134.0 2182 34.7
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1129.0 2187 34.3
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1122.8 2186 35.2
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1119.8 2201 34.8
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1113.2 2219 35.2
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1113.2 2288 34.4
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1112.1 2220 33.5
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1112.1 2354 33.3
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1110.1 2204 34.3
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1110.1 2194 34.4
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1108.2 2205 34.2
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1106.3 2199 34.1
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1104.0 2216 34.3
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1103.2 2204 33.7
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1102.8 2175 35.0
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 1101.7 2192 34.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1101.7 2199 34.0
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1101.3 2289 33.8
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1100.5 2188 34.1
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1099.0 2198 34.4
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1099.0 2238 33.0
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1096.3 2194 34.2
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1095.5 2197 34.2
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1094.7 2200 34.1
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1084.7 2209 34.1
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 1079.7 2217 33.9
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 2.3e-310 1070.1 2223 33.9
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 2.4e-307 1060.1 2217 33.8
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 2.4e-307 1060.1 2195 33.8
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 1.7e-305 1053.9 2239 33.0
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 2.2e-305 1053.5 2239 33.0
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 4.2e-304 1049.3 2203 33.8
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 9.4e-304 1048.1 2237 34.0
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 5.2e-302 1042.3 2198 33.8
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 5.2e-302 1042.3 2198 33.8
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 2.4e-299 1033.5 2186 33.8
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 3.1e-299 1033.1 2182 33.9
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 5.3e-299 1032.3 2182 34.0
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.2e-267 926.8 2219 31.0
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.3e-265 920.6 2203 30.9
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 1.8e-238 831.2 1341 38.3
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.9e-234 815.8 1781 33.1
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 2.8e-231 807.4 1476 37.0
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 7.6e-229 799.3 2193 29.1
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 8.7e-225 785.8 1333 37.0
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.0e-208 731.5 1381 35.4
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 1.7e-204 718.4 1286 36.4
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 8.2e-199 699.5 1296 36.7
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.3e-193 681.4 1314 35.3
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 4.8e-191 673.7 1767 30.4
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.1e-186 658.3 1783 30.3
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.8e-177 626.7 1310 33.8
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 4.1e-174 617.5 1853 28.7
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.5e-168 599.0 1261 33.5
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.2e-157 562.8 2097 26.6
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 6.4e-151 540.4 916 36.6
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 1.4e-150 539.3 1417 30.2
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.9e-148 531.2 918 37.5
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.4e-143 513.8 915 36.5
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 1.0e-140 506.5 904 36.6
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 7.6e-128 463.8 859 35.5
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 7.8e-125 453.8 2308 25.4
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 6.6e-124 450.7 1030 33.0
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 2.3e-108 399.1 905 32.4
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 9.6e-107 393.7 906 32.9
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 3.7e-98 365.2 629 38.2
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 1.0e-92 347.1 388 46.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 9.7e-91 340.5 1309 25.8
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 1.0e-87 330.5 518 38.6
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 4.7e-85 321.6 2006 22.8
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 2.2e-79 302.8 379 43.8
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.9e-79 302.4 239 60.3
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 4.8e-74 285.0 309 47.2
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 3.5e-72 278.9 2224 21.4
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 1.0e-68 267.3 302 46.7
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.7e-66 260.0 316 43.7
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 4.2e-62 245.4 370 39.7
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.7e-58 233.4 2184 20.8
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.8e-52 213.4 2229 21.2
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 7.3e-46 191.4 307 37.8
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-45 190.7 2147 20.5
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 2.3e-44 186.4 364 34.3
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 2.9e-42 179.5 178 47.2
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-40 174.1 1040 22.5
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 5.0e-39 168.7 478 28.5
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.2e-37 161.8 2188 20.2
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-35 156.8 919 22.3
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.8e-28 131.7 164 41.5
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 5.4e-25 122.1 142 43.0
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 7.3e-22 111.7 245 33.1
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.6e-21 110.5 75 68.0
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 4.0e-20 105.9 158 39.9
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 2.4e-17 96.7 68 63.2
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 1.6e-16 94.0 148 36.5
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 1.1e-14 87.8 134 38.1
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.5e-14 86.7 69 56.5
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 6.2e-13 82.0 250 28.0
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 8.1e-13 81.6 475 23.2
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 8.4e-10 71.6 45 66.7
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 7.1e-09 68.6 115 35.7
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.3e-07 64.3 40 72.5
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 1.7e-07 63.9 172 27.9


User provided reference genes

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