Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.3e-44 182.2 115 100.0
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.7e-23 112.8 108 75.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.2e-23 112.5 108 75.9
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.6e-21 106.3 108 60.2
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.7e-21 105.5 113 54.9
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 3.5e-21 105.1 107 66.4
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.9e-19 99.4 107 69.2
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 4.3e-19 98.2 107 68.2
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 5.7e-19 97.8 107 68.2
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 5.7e-19 97.8 107 68.2
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 7.4e-19 97.4 107 68.2
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 7.4e-19 97.4 107 68.2
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.4e-19 97.4 107 51.4
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.7e-19 97.1 107 68.2
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.3e-18 96.7 107 67.3
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 68.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.6e-18 96.3 107 67.3
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 66.4
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 67.3
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 67.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 67.3
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 67.3
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 67.3
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.2e-18 95.9 107 64.5
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 66.4
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 66.4
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 66.4
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 50.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 67.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 65.4
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 67.3
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 67.3
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.8e-18 95.5 107 66.4
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 67.3
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 67.3
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 66.4
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 67.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 67.3
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 3.7e-18 95.1 121 59.5
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 3.7e-18 95.1 107 67.3
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 67.3
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 67.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 67.3
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 67.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.8e-18 94.7 107 66.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 6.3e-18 94.4 107 67.3
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 6.3e-18 94.4 107 67.3
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 6.3e-18 94.4 107 66.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 6.3e-18 94.4 107 66.4
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 6.3e-18 94.4 107 66.4
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 67.3
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 66.4
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 66.4
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 66.4
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 65.4
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 65.4
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 65.4
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 64.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 8.2e-18 94.0 107 66.4
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 66.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 65.4
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 65.4
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 65.4
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 65.4
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 66.4
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 64.5
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 65.4
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 64.5
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 66.4
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.1e-17 93.6 107 66.4
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.4e-17 93.2 107 65.4
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-17 93.2 107 66.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-17 93.2 107 65.4
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.4e-17 93.2 107 65.4
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 66.4
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.8e-17 92.8 121 53.7
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.8e-17 92.8 107 65.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 66.4
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 66.4
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 66.4
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.4e-17 92.4 107 65.4
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.1e-17 92.0 107 66.4
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.1e-17 92.0 107 66.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.1e-17 92.0 107 65.4
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.1e-17 92.0 107 64.5
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 4.1e-17 91.7 107 64.5
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.1e-17 91.7 107 66.4
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.1e-17 91.7 107 66.4
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 5.3e-17 91.3 107 63.6
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 5.3e-17 91.3 107 64.5
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 5.3e-17 91.3 107 64.5
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 5.3e-17 91.3 107 63.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 5.3e-17 91.3 107 63.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.9e-17 90.9 107 62.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 6.9e-17 90.9 107 64.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 9.0e-17 90.5 107 62.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.2e-16 90.1 107 64.5
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.2e-16 90.1 107 66.4
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.2e-16 90.1 107 63.6
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.5e-16 89.7 107 62.6
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 2.0e-16 89.4 106 65.1
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.0e-16 89.4 106 65.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.6e-16 89.0 106 65.1
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 3.4e-16 88.6 107 62.6
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 4.5e-16 88.2 107 64.5
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 4.5e-16 88.2 107 61.7
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 5.9e-16 87.8 107 67.3
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 5.9e-16 87.8 106 64.2
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 7.7e-16 87.4 107 64.5
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 7.7e-16 87.4 107 63.6
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-15 85.1 98 65.3
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-15 85.1 98 65.3
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 3.8e-15 85.1 107 57.9
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.1e-14 83.6 109 58.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.9e-14 82.8 96 65.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.2e-14 81.6 96 63.5
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.5e-14 81.3 56 71.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 7.2e-14 80.9 96 64.6
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.6e-13 79.7 94 53.2
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.1e-13 77.8 101 44.6
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 6.1e-13 77.8 58 65.5
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 5.1e-12 74.7 58 63.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.0e-11 72.8 56 62.5
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.5e-08 63.2 41 73.2
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.2e-07 59.3 80 60.0
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-07 58.5 85 60.0
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.2e-06 55.5 77 54.5


User provided reference genes

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