Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.4e-287 992.3 493 100.0
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 3.3e-177 625.5 482 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.7e-134 483.0 418 60.5
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 1.8e-101 374.0 534 42.3
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.3e-101 373.6 468 43.4
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 3.0e-101 373.2 448 47.3
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 3.9e-101 372.9 473 46.1
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 3.9e-101 372.9 473 46.1
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 8.7e-101 371.7 486 45.5
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 8.7e-101 371.7 449 47.0
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-100 371.3 448 47.1
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 1.1e-100 371.3 448 47.1
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 1.1e-100 371.3 513 44.2
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.5e-100 370.9 448 46.7
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.9e-100 370.5 467 45.6
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 2.5e-100 370.2 467 45.4
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 2.5e-100 370.2 467 45.4
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 2.5e-100 370.2 467 45.4
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 2.5e-100 370.2 467 45.4
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 2.5e-100 370.2 467 45.4
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.5e-100 370.2 448 46.7
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 2.5e-100 370.2 448 46.7
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 5.6e-100 369.0 448 46.2
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 5.6e-100 369.0 448 47.1
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 5.6e-100 369.0 434 45.4
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 5.6e-100 369.0 448 47.3
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 47.1
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 7.4e-100 368.6 469 45.2
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 46.4
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 46.4
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 46.4
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 47.3
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 47.3
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 7.4e-100 368.6 469 45.0
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 7.4e-100 368.6 448 46.4
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 7.4e-100 368.6 467 45.4
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 9.6e-100 368.2 460 45.2
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 9.6e-100 368.2 476 44.7
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 9.6e-100 368.2 476 44.7
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 9.6e-100 368.2 448 46.4
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 9.6e-100 368.2 448 46.4
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.3e-99 367.9 444 46.8
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.3e-99 367.9 448 46.2
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.3e-99 367.9 448 46.2
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 1.3e-99 367.9 448 46.2
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.3e-99 367.9 479 45.3
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.6e-99 367.5 448 46.9
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 1.6e-99 367.5 448 46.9
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 1.6e-99 367.5 448 46.7
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 1.6e-99 367.5 448 46.7
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.1e-99 367.1 448 46.2
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 2.1e-99 367.1 448 46.7
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 2.8e-99 366.7 469 45.2
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 2.8e-99 366.7 448 47.1
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 2.8e-99 366.7 448 47.1
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 2.8e-99 366.7 448 46.4
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.8e-99 366.7 480 45.2
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 2.8e-99 366.7 448 46.7
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 3.7e-99 366.3 448 46.7
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 3.7e-99 366.3 448 46.4
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 3.7e-99 366.3 485 44.7
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 3.7e-99 366.3 473 45.2
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 4.8e-99 365.9 448 46.7
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 4.8e-99 365.9 451 46.1
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 4.8e-99 365.9 451 46.1
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 4.8e-99 365.9 444 46.6
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 4.8e-99 365.9 448 46.4
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 4.8e-99 365.9 436 47.0
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 6.2e-99 365.5 448 47.1
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 6.2e-99 365.5 448 47.1
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 6.2e-99 365.5 448 46.4
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 6.2e-99 365.5 448 46.4
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 6.2e-99 365.5 449 46.3
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 8.2e-99 365.2 448 46.4
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 8.2e-99 365.2 448 46.4
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 8.2e-99 365.2 470 45.1
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 8.2e-99 365.2 448 46.9
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 8.2e-99 365.2 448 47.3
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 1.1e-98 364.8 448 47.3
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 1.1e-98 364.8 448 46.4
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 1.1e-98 364.8 496 43.8
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 1.4e-98 364.4 460 45.4
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 1.4e-98 364.4 448 46.9
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.4e-98 364.4 448 46.4
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.4e-98 364.4 448 46.9
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.4e-98 364.4 447 46.8
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 1.4e-98 364.4 478 45.2
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 1.8e-98 364.0 448 46.9
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 1.8e-98 364.0 448 46.9
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 1.8e-98 364.0 448 46.9
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.8e-98 364.0 502 43.2
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 1.8e-98 364.0 448 46.4
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.8e-98 364.0 448 46.2
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 2.4e-98 363.6 483 45.1
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 2.4e-98 363.6 448 46.7
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 3.1e-98 363.2 448 46.2
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.1e-98 363.2 448 46.9
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 4.0e-98 362.8 448 46.7
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 4.0e-98 362.8 448 46.4
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 4.0e-98 362.8 448 46.9
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 4.0e-98 362.8 448 46.4
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 4.0e-98 362.8 472 44.9
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 5.3e-98 362.5 465 44.9
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 6.9e-98 362.1 449 46.8
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 6.9e-98 362.1 448 45.5
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 6.9e-98 362.1 462 45.5
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 9.0e-98 361.7 448 46.4
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 9.0e-98 361.7 448 46.4
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.5e-97 360.9 490 43.1
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 1.5e-97 360.9 481 45.5
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 1.5e-97 360.9 473 44.8
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 2.0e-97 360.5 449 46.8
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 2.6e-97 360.1 503 43.5
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 2.6e-97 360.1 465 44.7
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 3.4e-97 359.8 451 45.9
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 3.4e-97 359.8 451 45.9
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 3.4e-97 359.8 436 46.6
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 4.5e-97 359.4 463 45.8
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 5.8e-97 359.0 509 42.8
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 7.6e-97 358.6 472 44.7
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.3e-96 357.8 470 44.9
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 1.7e-96 357.5 512 42.0
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 6.5e-96 355.5 461 42.5
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 2.5e-95 353.6 414 47.1
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 3.2e-95 353.2 481 43.9
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 5.5e-95 352.4 469 43.9
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 5.5e-95 352.4 510 43.1
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.2e-94 351.3 510 42.2
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 1.3e-93 347.8 503 42.3
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 2.3e-93 347.1 475 43.8
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.3e-93 347.1 472 43.6
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 6.7e-93 345.5 484 43.4
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 7.4e-92 342.0 508 42.5
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.8e-90 337.4 517 42.0
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 4.1e-90 336.3 512 40.4
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 3.4e-89 333.2 436 45.0
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 7.7e-89 332.0 449 43.0
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 7.7e-89 332.0 506 40.9
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 2.9e-88 330.1 460 41.5
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 1.4e-87 327.8 448 43.1
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 7.2e-87 325.5 448 43.1
SEGI_04115 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.7e-86 323.6 295 55.6
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 4.6e-86 322.8 483 41.6
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 1.0e-85 321.6 408 47.1
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 3.9e-85 319.7 359 49.9
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 3.9e-85 319.7 512 40.0
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.5e-84 317.0 437 41.4
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 3.7e-83 313.2 451 42.4
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 8.2e-75 285.4 513 37.2
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 5.3e-74 282.7 210 67.1
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.0e-72 278.5 333 47.7
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 4.4e-68 263.1 472 38.3
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 7.4e-68 262.3 361 40.4
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.7e-67 261.2 448 39.1
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.3e-66 256.1 494 34.6
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 1.2e-65 255.0 254 52.8
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 1.2e-65 255.0 263 52.1
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 8.0e-62 242.3 346 39.0
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 7.5e-60 235.7 185 63.8
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 1.4e-58 231.5 199 59.3
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.2e-54 218.4 274 43.8
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 4.8e-51 206.5 204 53.9
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 1.0e-45 188.7 218 49.5
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.0e-40 172.2 290 39.7
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 2.8e-38 164.1 404 29.5
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 2.3e-37 161.0 432 28.9
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 1.7e-35 154.8 153 52.9
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 4.6e-33 146.7 212 41.5
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 5.6e-31 139.8 249 37.3
PSO210G6350 Papaver somniferum HOM05D000006 ORTHO05D004030 5.4e-26 123.2 206 34.0
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 7.1e-26 122.9 171 42.7
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 7.3e-23 112.8 154 43.5
TAR376G0202 Trochodendron aralioides HOM05D000006 ORTHO05D004030 3.6e-22 110.5 105 49.5
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 4.7e-22 110.2 105 45.7
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 5.2e-21 106.7 120 50.0
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 4.6e-17 93.6 153 41.2
Gohir.D04G003466 Gossypium hirsutum HOM05D000006 ORTHO05D004030 3.0e-16 90.9 111 45.9
arahy.Tifrunner.gnm1.ann1.D5YD9F Arachis hypogaea HOM05D000006 ORTHO05D004030 6.6e-16 89.7 111 45.0
Gorai.012G004600 Gossypium raimondii HOM05D000006 ORTHO05D004030 8.6e-16 89.4 111 45.0
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 5.6e-15 86.7 66 65.2
CAN.G523.61 Capsicum annuum HOM05D001058 ORTHO05D000911 2.0e-12 78.2 160 34.4
SEGI_16294 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 8.4e-11 72.8 106 41.5
DCAR_031231 Daucus carota HOM05D000006 ORTHO05D004030 3.3e-07 60.8 59 49.2
BraA06t26075Z Brassica rapa HOM05D000006 ORTHO05D004030 5.6e-07 60.1 50 58.0


User provided reference genes

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