Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.0e-297 1025.0 511 100.0
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 5.9e-92 342.4 471 43.9
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.9e-91 340.1 512 39.6
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 3.5e-76 290.0 511 35.4
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 5.9e-76 289.3 503 37.8
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 7.7e-76 288.9 506 36.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.0e-75 286.2 500 35.2
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 8.5e-75 285.4 511 35.2
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 9.4e-74 282.0 500 34.4
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 9.4e-74 282.0 503 36.2
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 2.1e-73 280.8 512 35.2
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.8e-72 277.7 500 34.4
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.3e-72 277.3 515 34.8
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 4.0e-72 276.6 511 35.4
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 4.0e-72 276.6 416 39.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 8.8e-72 275.4 511 34.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 8.8e-72 275.4 507 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 3.3e-71 273.5 243 53.9
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.3e-70 271.6 516 33.7
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 1.7e-70 271.2 472 35.4
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 2.2e-70 270.8 508 34.8
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 2.2e-70 270.8 503 34.2
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 2.2e-70 270.8 504 34.7
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.7e-70 270.0 529 33.8
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.4e-69 267.3 507 34.3
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.2e-68 265.0 507 34.3
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 2.0e-68 264.2 506 34.0
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 2.7e-68 263.8 456 36.6
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.7e-68 263.8 501 34.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 4.5e-68 263.1 508 34.3
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 5.9e-68 262.7 389 39.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 7.7e-68 262.3 498 34.3
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.7e-67 261.2 342 42.7
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.9e-67 260.4 246 52.0
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 6.5e-67 259.2 504 33.9
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 6.5e-67 259.2 546 31.9
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.1e-66 258.5 554 33.4
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.1e-66 258.5 504 33.7
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 2.5e-66 257.3 503 33.4
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 4.2e-66 256.5 526 32.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 9.4e-66 255.4 507 34.5
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.4e-66 255.4 509 33.4
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 9.4e-66 255.4 510 34.3
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 2.7e-65 253.8 503 32.6
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.6e-65 253.4 243 50.2
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.6e-65 253.4 506 35.2
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 8.0e-65 252.3 369 40.7
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.0e-64 251.9 243 51.4
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.3e-64 250.8 356 39.9
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.0e-64 250.0 512 33.0
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 5.2e-64 249.6 518 34.2
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.8e-64 249.2 513 34.5
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 6.8e-64 249.2 506 33.2
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.8e-64 249.2 370 40.0
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 6.8e-64 249.2 504 33.7
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 6.8e-64 249.2 324 41.0
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 1.5e-63 248.1 506 33.6
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.5e-63 248.1 246 49.2
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.0e-63 247.7 311 39.5
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.6e-63 247.3 502 32.9
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 3.4e-63 246.9 507 32.3
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.4e-63 246.9 246 48.8
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 5.7e-63 246.1 503 32.8
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 7.5e-63 245.7 506 33.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.3e-62 245.0 311 39.5
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.7e-62 244.6 519 34.9
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 2.2e-62 244.2 350 41.4
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 2.2e-62 244.2 240 47.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.1e-61 241.9 548 32.8
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.4e-61 241.5 359 36.5
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.8e-61 241.1 508 34.3
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.8e-61 241.1 503 32.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 5.4e-61 239.6 439 35.1
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 7.7e-60 235.7 503 32.0
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 2.3e-59 234.2 501 31.5
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 2.9e-59 233.8 501 31.5
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 3.8e-59 233.4 349 40.1
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.1e-58 231.9 509 32.4
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.9e-58 231.1 507 32.1
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.5e-58 230.7 308 39.3
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 3.3e-58 230.3 503 33.8
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 3.3e-58 230.3 249 48.2
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 3.3e-58 230.3 503 31.4
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.3e-58 230.3 329 37.7
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.2e-57 228.4 515 32.4
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.6e-57 228.0 503 33.4
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.0e-56 225.3 522 32.4
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.4e-56 224.9 514 32.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 5.2e-56 223.0 522 31.8
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 6.8e-56 222.6 331 37.5
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 2.6e-55 220.7 489 33.5
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 4.4e-55 219.9 353 37.1
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 9.8e-55 218.8 350 38.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.7e-54 218.0 358 36.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 2.2e-54 217.6 251 44.6
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 8.3e-54 215.7 321 38.9
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.4e-53 214.2 483 32.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.4e-53 214.2 505 31.7
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 3.1e-53 213.8 505 29.7
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 2.7e-52 210.7 522 31.4
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.7e-52 210.7 354 34.5
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.5e-52 210.3 513 31.6
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.0e-51 208.8 539 31.0
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.3e-51 208.4 361 37.1
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.5e-50 204.9 374 35.3
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-47 195.3 193 50.3
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.3e-46 191.8 506 29.4
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.8e-45 188.0 525 29.1
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.0e-43 182.2 323 34.7
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-42 178.3 187 48.7
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.9e-42 177.9 444 31.3
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 2.5e-42 177.6 317 33.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 3.3e-42 177.2 182 47.8
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.8e-41 174.1 459 30.5
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.8e-40 169.5 170 50.0
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 4.4e-39 166.8 181 43.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.5e-39 166.0 445 32.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 8.3e-38 162.5 186 45.7
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.0e-37 159.5 190 42.6
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.6e-36 158.3 355 31.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.6e-31 141.0 480 26.5
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.1e-29 135.6 502 26.1
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 3.5e-28 130.6 255 34.1
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.1e-26 125.6 393 27.2
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.5e-26 124.4 204 37.7
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.6e-25 121.7 397 27.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 3.6e-25 120.6 128 44.5
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-21 109.0 410 26.6
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.9e-18 98.2 110 41.8
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.6e-17 95.1 131 38.2
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.2e-17 93.2 151 37.1
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.1e-16 92.4 325 26.2
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.1e-16 92.4 124 41.1
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 1.7e-11 75.1 65 53.8
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 5.1e-11 73.6 72 45.8
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 6.6e-11 73.2 122 36.1
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 8.7e-11 72.8 447 23.9
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 6.2e-09 66.6 69 46.4


User provided reference genes

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