Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 3640.1 1990 100.0
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 2953.7 1944 83.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 2953.7 1944 83.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1906.3 2009 58.9
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1553.9 1873 50.6
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1537.7 1744 54.4
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1515.4 1872 50.1
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1513.4 1846 50.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1496.9 1876 49.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1494.9 1865 49.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1489.2 1863 50.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1489.2 1859 50.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1487.6 1880 48.9
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1486.5 1855 49.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1484.2 1868 49.6
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1483.0 1878 49.8
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1481.8 1855 49.3
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1481.1 1856 49.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1477.6 1897 49.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1475.7 1875 48.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1474.5 1855 49.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1474.1 1894 48.4
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1473.4 1895 48.4
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1470.7 1852 49.4
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1468.8 1875 48.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1467.6 1854 48.6
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1466.8 1855 48.9
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1465.7 1886 48.1
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1464.5 1857 49.4
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1463.7 1882 49.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1462.6 1868 48.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1459.1 1881 48.7
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1456.4 1840 48.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1454.1 1852 48.7
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1452.2 1869 48.1
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1451.0 1848 49.6
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1449.9 1859 48.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1449.5 1884 48.1
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1449.1 1864 49.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1449.1 1863 47.9
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1448.7 1848 48.1
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1447.2 1884 48.0
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1446.8 1860 49.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1446.0 1869 48.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1445.3 1877 48.2
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1444.9 1860 48.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1444.9 1863 48.4
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1444.1 1849 48.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1443.3 1874 48.8
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1441.4 1904 47.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1440.2 1845 49.1
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1439.1 1892 47.4
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1438.7 1876 48.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1436.8 1855 49.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1436.8 1865 49.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1436.4 1873 48.5
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1432.2 1857 47.7
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1432.2 1868 48.0
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1429.1 1856 48.9
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1427.2 1952 47.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1424.5 1852 47.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1419.8 1836 48.7
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1419.8 1839 48.3
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1418.3 1861 48.1
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1415.2 1850 48.5
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1415.2 1854 48.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1411.4 1865 48.0
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1409.8 1875 48.1
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1409.0 1882 47.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1406.7 1880 47.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1404.4 1858 47.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1403.7 1866 47.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1402.5 1864 47.4
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1401.3 1871 47.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1399.0 1869 47.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1397.1 1905 46.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1395.2 1851 47.0
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1389.0 1746 49.9
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1387.5 1861 47.6
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1387.5 1866 47.3
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1385.9 1843 47.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1377.5 1853 46.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1377.1 1863 45.9
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1377.1 1858 47.0
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1376.3 1848 47.3
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1365.9 1852 46.5
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1364.0 1777 47.7
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1364.0 1848 46.9
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1355.1 1869 45.7
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1354.3 1862 46.1
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1352.4 1883 45.5
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1344.3 1850 47.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1325.5 1844 46.3
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1316.2 1866 44.9
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1310.0 1866 44.8
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1303.9 1876 44.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1303.1 1876 44.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1302.0 1863 45.8
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1299.3 1840 46.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1295.8 1885 44.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1291.2 1855 44.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1278.1 1864 44.2
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1273.5 1883 43.5
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1273.5 1896 43.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1270.8 1861 44.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1266.9 1878 43.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1265.8 1859 43.7
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1262.3 1858 43.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1261.1 1844 43.8
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1257.7 1858 43.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1257.7 1858 43.0
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1150.2 1741 44.0
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1116.3 1390 48.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1104.4 1288 50.9
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 0.0e+00 1104.0 1677 45.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 1.0e-280 971.5 1495 46.0
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 3.2e-279 966.5 1873 38.7
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-269 934.5 1278 47.9
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-263 914.8 1227 48.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 7.0e-250 869.0 1038 50.4
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 9.2e-242 842.0 1857 35.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.6e-236 823.9 823 59.2
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 9.2e-234 815.5 1512 39.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.9e-216 756.9 901 50.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.9e-202 711.4 870 49.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 1.9e-199 701.4 1355 40.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 6.9e-197 693.0 871 49.8
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 3.8e-195 687.2 908 47.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.2e-186 657.1 803 48.6
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.3e-186 656.0 1464 34.6
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.7e-175 620.2 685 52.7
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.2e-158 565.1 1360 36.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 3.2e-146 524.6 684 46.1
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-138 497.7 421 58.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.1e-129 468.8 747 41.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.6e-113 414.8 429 51.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.7e-113 414.5 347 58.8
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.4e-109 402.1 663 40.6
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-106 391.3 421 51.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.4e-95 355.1 420 46.9
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.1e-88 332.0 417 46.8
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 9.0e-88 330.5 2075 24.6
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-79 303.5 428 39.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.9e-63 248.1 641 31.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-57 230.3 461 33.6
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 3.1e-48 199.1 160 59.4
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.0e-44 184.5 232 52.6
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.0e-43 182.2 888 26.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.3e-42 179.1 162 64.8
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.1e-40 172.6 386 34.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.9e-38 166.0 447 35.6
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.4e-34 152.5 212 42.0
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.2e-29 136.0 192 49.0
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.0e-27 131.0 414 30.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.5e-21 110.5 76 64.5
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 3.7e-09 69.3 62 48.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.4e-08 67.4 33 78.8
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.1e-08 65.9 53 50.9


User provided reference genes

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