Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 6.5e-248 861.3 880 100.0
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 4.0e-64 250.8 298 57.4
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.0e-59 234.6 358 48.6
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.1e-58 232.6 192 69.3
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 1.1e-58 232.6 192 56.2
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 9.9e-55 219.5 135 71.1
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.4e-53 213.8 149 63.8
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 2.1e-49 201.8 167 58.1
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 3.8e-46 191.0 308 49.0
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.0e-43 183.0 295 54.9
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 1.0e-43 183.0 133 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 6.6e-43 180.3 138 59.4
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.1e-42 179.5 125 65.6
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 9.6e-42 176.4 295 53.9
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.1e-40 172.9 122 62.3
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.8e-40 172.2 123 63.4
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 2.4e-40 171.8 125 64.0
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.4e-40 171.8 108 67.6
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 4.0e-40 171.0 122 64.8
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 1.2e-39 169.5 122 63.1
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.5e-39 169.1 122 63.1
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.5e-39 169.1 121 63.6
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 2.0e-39 168.7 108 67.6
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.0e-39 168.7 121 63.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 2.0e-39 168.7 122 62.3
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 2.6e-39 168.3 108 69.4
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.4e-39 167.9 123 61.8
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 3.4e-39 167.9 282 56.7
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 4.5e-39 167.5 122 63.1
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 7.6e-39 166.8 135 60.7
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 7.6e-39 166.8 135 57.0
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 1.3e-38 166.0 123 61.8
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.3e-38 166.0 135 57.0
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.7e-38 165.6 130 59.2
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.7e-38 165.6 177 46.9
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.9e-38 164.9 124 58.9
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 3.8e-38 164.5 122 61.5
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 4.9e-38 164.1 122 60.7
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 4.9e-38 164.1 109 65.1
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 8.4e-38 163.3 111 66.7
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 8.4e-38 163.3 108 65.7
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 8.4e-38 163.3 108 65.7
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 8.4e-38 163.3 110 67.3
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 1.4e-37 162.5 122 62.3
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.4e-37 161.8 122 61.5
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.2e-37 161.4 122 61.5
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 3.2e-37 161.4 123 60.2
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 3.2e-37 161.4 122 56.6
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 4.2e-37 161.0 122 58.2
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 5.4e-37 160.6 122 56.6
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 5.4e-37 160.6 122 58.2
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 5.4e-37 160.6 122 62.3
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 7.1e-37 160.2 123 59.3
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 9.3e-37 159.8 122 61.5
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 9.3e-37 159.8 122 61.5
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 9.3e-37 159.8 108 65.7
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 9.3e-37 159.8 127 56.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.2e-36 159.5 108 65.7
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 1.2e-36 159.5 127 59.8
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 1.6e-36 159.1 122 59.0
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 2.1e-36 158.7 123 59.3
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 2.1e-36 158.7 126 56.3
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.1e-36 158.7 122 59.8
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 2.7e-36 158.3 127 59.1
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 3.5e-36 157.9 122 59.0
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 4.6e-36 157.5 122 57.4
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 6.0e-36 157.1 122 59.0
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.0e-35 156.4 122 59.0
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 1.0e-35 156.4 124 61.3
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 1.0e-35 156.4 122 60.7
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.8e-35 155.6 115 60.9
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.0e-35 154.8 122 58.2
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 3.9e-35 154.5 122 55.7
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 3.9e-35 154.5 122 58.2
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 3.9e-35 154.5 92 71.7
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 3.9e-35 154.5 122 61.5
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 3.9e-35 154.5 108 64.8
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 5.1e-35 154.1 122 58.2
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 5.1e-35 154.1 122 58.2
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 6.7e-35 153.7 122 61.5
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 6.7e-35 153.7 122 59.8
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 1.1e-34 152.9 108 63.0
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 4.3e-34 151.0 122 59.0
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 7.4e-34 150.2 109 61.5
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 9.6e-34 149.8 157 43.9
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.6e-33 149.1 111 62.2
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 8.1e-33 146.7 122 55.7
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 1.4e-32 146.0 139 51.8
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 2.4e-32 145.2 122 54.9
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 2.4e-32 145.2 122 58.2
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 6.9e-32 143.7 97 63.9
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.2e-31 142.9 123 55.3
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 1.9e-29 135.6 114 56.1
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.3e-27 129.4 91 63.7
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.3e-27 129.4 121 50.4
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 2.5e-26 125.2 123 51.2
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 9.6e-26 123.2 135 47.4
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 3.4e-23 114.8 240 45.4
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 2.7e-20 105.1 69 68.1
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 8.7e-19 100.1 135 40.7
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 1.6e-17 95.9 67 64.2
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 1.6e-17 95.9 181 66.3
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.3e-14 86.3 157 34.4
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.9e-13 82.4 48 77.1
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 2.7e-12 78.6 48 72.9
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 5.7e-10 70.9 47 66.0
Actinidia09322 Actinidia chinensis HOM05D006106 ORTHO05D007662 6.3e-09 67.4 42 61.9
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 8.2e-09 67.0 166 27.7
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.1e-08 66.6 59 45.8
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 1.4e-08 66.2 42 64.3
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 3.1e-08 65.1 102 32.4
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 6.9e-08 63.9 386 22.0
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 9.1e-08 63.5 95 32.6
CBR_g45232 Chara braunii HOM05D002479 ORTHO05D009256 9.1e-08 63.5 127 25.2
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.2e-07 63.2 111 27.9
MSTRG.11793 Avicennia marina HOM05D000001 ORTHO05D000003 1.2e-07 63.2 131 23.7
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.2e-07 63.2 42 61.9
AUR62038966 Chenopodium quinoa HOM05D001620 ORTHO05D003132 3.4e-07 61.6 135 27.4
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 3.4e-07 61.6 133 27.1
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 3.4e-07 61.6 149 26.2
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.4e-07 61.6 60 41.7
Glyma.08G140300 Glycine max HOM05D006414 ORTHO05D007780 4.5e-07 61.2 131 27.5
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 5.9e-07 60.8 70 45.7
MSTRG.22018 Avicennia marina HOM05D001620 ORTHO05D005461 7.7e-07 60.5 124 25.8
SEGI_20759 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 7.7e-07 60.5 109 24.8
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.0e-06 60.1 124 26.6
Phvul.002G263600 Phaseolus vulgaris HOM05D006414 ORTHO05D007780 1.0e-06 60.1 126 31.0
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 1.0e-06 60.1 144 28.5
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.3e-06 59.7 124 26.6
Aa31LG6G15650 Aethionema arabicum HOM05D006414 ORTHO05D007780 1.7e-06 59.3 142 26.8
Ah.03g149270 Amaranthus hybridus HOM05D006414 ORTHO05D007780 1.7e-06 59.3 154 28.6
Glyma.05G182700 Glycine max HOM05D006414 ORTHO05D007780 1.7e-06 59.3 127 27.6
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.7e-06 59.3 52 59.6
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 1.7e-06 59.3 135 26.7
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 1.7e-06 59.3 135 26.7
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 1.7e-06 59.3 96 32.3
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.2e-06 58.9 112 30.4
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 2.9e-06 58.5 119 30.3
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 2.9e-06 58.5 111 29.7
Gohir.D10G102200 Gossypium hirsutum HOM05D006414 ORTHO05D007780 3.8e-06 58.2 108 31.5
Lalb_Chr07g0184891 Lupinus albus HOM05D006414 ORTHO05D007780 3.8e-06 58.2 125 30.4
Phvul.006G222000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 3.8e-06 58.2 112 26.8
Sc03g0004230 Simmondsia chinensis HOM05D006414 ORTHO05D007780 3.8e-06 58.2 169 25.4
Thecc.04G243400 Theobroma cacao HOM05D002479 ORTHO05D002675 3.8e-06 58.2 112 26.8
unitig_28.g29440 Utricularia gibba HOM05D006414 ORTHO05D007780 3.8e-06 58.2 97 28.9
Zm00001eb281690 Zea mays HOM05D001779 ORTHO05D001753 3.8e-06 58.2 110 29.1
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 5.0e-06 57.8 76 35.5
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 5.0e-06 57.8 76 35.5
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 5.0e-06 57.8 97 30.9
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 5.0e-06 57.8 97 30.9
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 5.0e-06 57.8 129 24.8
Peaxi162Scf01651g00012 Petunia axillaris HOM05D006414 ORTHO05D007780 5.0e-06 57.8 93 31.2
CDE10G0169 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 6.5e-06 57.4 129 27.1
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 6.5e-06 57.4 100 34.0
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.5e-06 57.4 143 55.2
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 6.5e-06 57.4 116 29.3
Glyma.15G269900 Glycine max HOM05D001620 ORTHO05D005461 6.5e-06 57.4 126 28.6
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.5e-06 57.4 151 25.8
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.5e-06 57.4 151 25.8
Thecc.01G110400 Theobroma cacao HOM05D006414 ORTHO05D007780 6.5e-06 57.4 76 36.8
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 8.5e-06 57.0 134 24.6
Eucgr.I00342 Eucalyptus grandis HOM05D006414 ORTHO05D007780 8.5e-06 57.0 76 35.5
Eucgr.L02634 Eucalyptus grandis HOM05D006414 ORTHO05D007780 8.5e-06 57.0 76 35.5
Phvul.005G155600 Phaseolus vulgaris HOM05D001620 ORTHO05D005461 8.5e-06 57.0 126 27.0
SGA_v2.0_scaffold2G01307 Striga asiatica HOM05D006414 ORTHO05D007780 8.5e-06 57.0 76 36.8
GSVIVG01022204001 Vitis vinifera HOM05D006414 ORTHO05D007780 8.5e-06 57.0 157 28.0


User provided reference genes

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