Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 1.7e-117 426.0 212 100.0
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 4.8e-32 142.1 125 61.6
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 5.7e-17 92.0 120 47.5
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 4.1e-15 85.9 108 47.2
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.6e-14 84.0 104 46.2
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 7.7e-14 81.6 149 38.3
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 2.3e-13 80.1 106 49.1
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.3e-13 80.1 90 51.1
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 3.8e-13 79.3 90 51.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 3.8e-13 79.3 87 50.6
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 5.0e-13 79.0 90 50.0
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.6e-13 78.6 98 45.9
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.6e-13 78.6 98 45.9
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.6e-13 78.6 90 51.1
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 6.6e-13 78.6 90 51.1
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 8.6e-13 78.2 87 49.4
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 8.6e-13 78.2 108 42.6
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 8.6e-13 78.2 90 51.1
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 8.6e-13 78.2 87 49.4
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.1e-12 77.8 90 48.9
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.5e-12 77.4 90 50.0
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 1.5e-12 77.4 90 51.1
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.9e-12 77.0 138 37.0
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.9e-12 77.0 90 48.9
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.9e-12 77.0 99 46.5
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.9e-12 77.0 96 46.9
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.9e-12 77.0 90 51.1
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.9e-12 77.0 125 40.8
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 2.5e-12 76.6 87 50.6
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 2.5e-12 76.6 90 50.0
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 2.5e-12 76.6 91 51.6
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 3.3e-12 76.3 90 48.9
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 4.3e-12 75.9 87 48.3
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 4.3e-12 75.9 87 48.3
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 5.6e-12 75.5 118 39.8
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 5.6e-12 75.5 87 50.6
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 5.6e-12 75.5 90 50.0
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 5.6e-12 75.5 87 47.1
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 7.3e-12 75.1 87 49.4
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 7.3e-12 75.1 96 46.9
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 7.3e-12 75.1 87 47.1
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 7.3e-12 75.1 93 51.6
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 7.3e-12 75.1 90 48.9
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 9.5e-12 74.7 90 46.7
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 9.5e-12 74.7 98 43.9
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 9.5e-12 74.7 90 46.7
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.2e-11 74.3 111 43.2
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 1.2e-11 74.3 122 38.5
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.2e-11 74.3 90 48.9
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.2e-11 74.3 91 51.6
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.2e-11 74.3 87 47.1
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-11 74.3 87 47.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.2e-11 74.3 90 47.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.6e-11 73.9 90 45.6
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.6e-11 73.9 90 46.7
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 2.1e-11 73.6 129 39.5
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.1e-11 73.6 90 44.4
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 2.1e-11 73.6 90 48.9
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 2.1e-11 73.6 90 46.7
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 2.1e-11 73.6 87 48.3
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.8e-11 73.2 87 47.1
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 2.8e-11 73.2 98 42.9
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 3.6e-11 72.8 90 45.6
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 3.6e-11 72.8 90 45.6
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 3.6e-11 72.8 87 44.8
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 3.6e-11 72.8 90 45.6
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 6.1e-11 72.0 90 44.4
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 6.1e-11 72.0 90 44.4
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 6.1e-11 72.0 90 45.6
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 6.1e-11 72.0 90 45.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 1.0e-10 71.2 90 44.4
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 1.0e-10 71.2 125 38.4
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.0e-10 71.2 90 45.6
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.0e-10 71.2 91 50.5
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.0e-10 71.2 91 50.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.4e-10 70.9 87 44.8
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.3e-10 70.1 96 45.8
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 2.3e-10 70.1 91 46.2
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.0e-10 69.7 90 45.6
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 3.0e-10 69.7 147 34.7
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 4.0e-10 69.3 92 45.7
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 5.2e-10 68.9 116 40.5
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 5.2e-10 68.9 90 45.6
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 5.2e-10 68.9 124 40.3
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.2e-09 67.8 103 42.7
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.5e-09 67.4 105 44.8
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.6e-09 66.6 85 43.5
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 3.4e-09 66.2 127 37.8
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 4.4e-09 65.9 90 43.3
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 4.4e-09 65.9 90 42.2
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 9.8e-09 64.7 90 45.6
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.3e-08 64.3 73 49.3
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.7e-08 63.9 127 39.4
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 2.2e-08 63.5 90 44.4
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 2.2e-08 63.5 109 43.1
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.2e-08 63.5 90 43.3
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.2e-08 63.5 75 46.7
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 2.9e-08 63.2 90 44.4
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 2.9e-08 63.2 95 42.1
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 3.7e-08 62.8 87 42.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 4.9e-08 62.4 90 43.3
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 4.9e-08 62.4 90 43.3
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 6.4e-08 62.0 119 35.3
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 6.4e-08 62.0 90 43.3
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 6.4e-08 62.0 90 43.3
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 6.4e-08 62.0 90 43.3
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 4.1e-07 59.3 88 40.9
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.9e-06 55.5 75 40.0


User provided reference genes

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