Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.5e-186 656.0 311 100.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 5.7e-82 308.5 195 70.8
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.8e-64 250.4 213 59.2
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.8e-64 250.4 193 60.6
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 4.1e-64 249.2 191 61.8
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.1e-64 249.2 191 61.3
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.1e-64 249.2 191 61.8
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 5.4e-64 248.8 191 61.8
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 9.2e-64 248.1 217 56.7
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 9.2e-64 248.1 191 61.8
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.2e-63 247.7 191 61.3
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.6e-63 247.3 191 61.8
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.6e-63 247.3 191 59.7
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.6e-63 247.3 219 57.1
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.0e-63 246.9 191 62.3
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.5e-63 246.1 215 57.7
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 4.6e-63 245.7 217 57.1
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.6e-63 245.7 189 62.4
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 4.6e-63 245.7 228 53.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 7.8e-63 245.0 191 61.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 7.8e-63 245.0 191 61.8
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.0e-62 244.6 191 61.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.0e-62 244.6 191 59.7
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.0e-62 244.6 191 61.3
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.0e-62 244.6 191 60.7
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.3e-62 244.2 191 60.2
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.7e-62 243.8 191 61.3
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.7e-62 243.8 191 61.3
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.7e-62 243.8 191 59.2
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.7e-62 243.8 217 56.2
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.9e-62 243.0 191 60.7
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.9e-62 243.0 191 60.7
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.9e-62 243.0 191 60.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.9e-62 242.7 191 60.2
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.9e-62 242.7 191 61.3
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 3.9e-62 242.7 191 59.7
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.9e-62 242.7 199 59.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 3.9e-62 242.7 191 59.7
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.0e-62 242.3 191 60.2
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 5.0e-62 242.3 191 59.2
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 5.0e-62 242.3 199 61.3
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 5.0e-62 242.3 189 61.9
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 6.6e-62 241.9 217 56.7
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.6e-62 241.9 217 56.2
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 6.6e-62 241.9 191 60.7
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 6.6e-62 241.9 191 60.2
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 6.6e-62 241.9 191 60.7
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 8.6e-62 241.5 191 62.3
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 8.6e-62 241.5 191 60.7
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 8.6e-62 241.5 192 60.4
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.5e-61 240.7 189 63.0
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.5e-61 240.7 191 60.7
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.5e-61 240.7 191 60.7
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.5e-61 240.7 191 61.3
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.5e-61 240.7 191 61.3
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.5e-61 240.7 191 60.7
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.9e-61 240.4 191 60.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.9e-61 240.4 191 60.7
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.5e-61 240.0 229 55.0
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.3e-61 239.6 191 59.7
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 4.3e-61 239.2 191 61.3
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 4.3e-61 239.2 191 59.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 4.3e-61 239.2 191 60.7
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.3e-61 239.2 191 60.2
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.3e-61 239.2 191 60.2
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 5.6e-61 238.8 193 58.5
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 5.6e-61 238.8 187 61.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 5.6e-61 238.8 191 60.7
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.6e-61 238.8 191 59.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 7.3e-61 238.4 191 59.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 7.3e-61 238.4 191 59.7
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 9.5e-61 238.0 191 60.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 9.5e-61 238.0 199 57.8
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.2e-60 237.7 191 58.1
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.2e-60 237.7 191 60.2
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.2e-60 237.7 191 60.2
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.2e-60 237.7 191 60.2
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-60 237.7 191 60.2
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.8e-60 236.5 191 59.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.8e-60 236.5 191 60.2
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.6e-60 236.1 215 56.3
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 4.7e-60 235.7 189 59.8
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.7e-60 235.7 191 61.3
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 8.0e-60 235.0 199 58.8
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.0e-59 234.6 191 59.2
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.0e-59 234.6 192 58.9
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.4e-59 234.2 191 59.7
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.4e-59 234.2 191 59.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.3e-59 233.4 191 58.6
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.3e-59 233.4 191 59.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 2.3e-59 233.4 197 59.9
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 4.0e-59 232.6 192 57.3
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 5.2e-59 232.3 193 57.0
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.2e-59 232.3 191 60.7
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 5.2e-59 232.3 191 61.3
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 5.2e-59 232.3 191 59.7
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.2e-59 232.3 212 56.6
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.2e-59 232.3 191 59.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 8.9e-59 231.5 215 56.3
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.2e-58 231.1 191 59.2
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-58 231.1 232 52.2
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.0e-58 230.3 180 62.2
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 2.6e-58 229.9 191 59.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.4e-58 229.6 194 58.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 3.4e-58 229.6 220 53.2
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 4.4e-58 229.2 191 59.2
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.8e-58 228.8 191 58.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 7.5e-58 228.4 217 55.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.3e-57 227.6 191 58.1
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 6.4e-57 225.3 192 57.3
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-56 224.6 177 57.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.2e-56 223.0 190 55.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 3.2e-56 223.0 193 56.5
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 4.1e-56 222.6 192 56.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.5e-55 219.5 207 54.1
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.3e-54 216.9 158 64.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 6.6e-54 215.3 231 51.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.9e-53 213.8 191 57.6
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 7.3e-53 211.8 191 55.0
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 7.3e-53 211.8 165 60.6
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.6e-52 210.7 157 63.7
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.6e-52 209.5 190 54.7
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.6e-52 209.5 244 46.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 4.7e-52 209.1 190 54.2
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.8e-51 207.2 192 54.7
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.3e-49 201.1 268 42.9
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.9e-42 174.9 190 50.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.5e-39 166.4 183 44.3
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 4.7e-36 156.0 140 55.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 8.1e-36 155.2 188 40.4
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.4e-35 154.5 123 61.8
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.5e-34 151.0 93 75.3
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.0e-34 150.6 141 52.5
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.4e-34 149.8 115 63.5
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 5.8e-34 149.1 93 73.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 9.9e-34 148.3 94 72.3
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.3e-33 147.9 152 48.7
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.3e-33 147.9 122 55.7
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.3e-33 147.9 94 71.3
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.3e-33 147.9 94 71.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.8e-33 146.4 99 69.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.4e-27 127.1 94 61.7
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.3e-27 125.9 94 61.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 5.3e-27 125.9 94 61.7
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.9e-23 112.1 77 70.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.3e-22 111.3 101 54.5
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.6e-20 104.4 64 71.9
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.1e-20 104.0 60 76.7
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.5e-18 97.8 151 40.4
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.0e-18 97.4 73 58.9
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-16 91.7 101 45.5
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.4e-13 79.0 69 55.1
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.6e-07 61.2 73 41.1
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 2.1e-07 60.8 185 29.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.0e-06 58.5 176 30.1
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.9e-06 56.6 159 31.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 3.9e-06 56.6 176 30.1
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.1e-06 56.2 172 26.7
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.1e-06 56.2 172 26.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 6.7e-06 55.8 188 29.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 6.7e-06 55.8 188 29.8
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 6.7e-06 55.8 188 29.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 6.7e-06 55.8 188 29.8


User provided reference genes

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