Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.1e-106 389.0 194 100.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.8e-95 351.3 194 87.6
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 81.4
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 79.9
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.1e-83 313.5 195 76.9
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 2.1e-82 309.3 194 74.2
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 5.1e-81 304.7 194 72.7
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 4.4e-80 301.6 194 72.2
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 4.4e-80 301.6 194 70.6
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 7.4e-80 300.8 194 71.6
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.4e-80 300.8 194 72.2
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.4e-80 300.8 194 72.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 72.2
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 72.7
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 71.6
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.7e-79 299.7 194 71.1
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.2e-79 299.3 194 72.7
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 2.2e-79 299.3 194 70.6
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 2.8e-79 298.9 194 70.6
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.8e-79 298.9 194 71.6
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 3.7e-79 298.5 194 70.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 3.7e-79 298.5 194 71.6
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 71.6
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 71.1
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 70.6
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 70.6
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 70.1
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 8.2e-79 297.4 194 70.6
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 8.2e-79 297.4 194 69.6
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.1e-78 297.0 194 70.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.1e-78 297.0 194 70.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.1e-78 297.0 194 70.1
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.4e-78 296.6 194 71.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 69.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 71.1
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.4e-78 295.8 193 70.5
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 3.1e-78 295.4 194 70.6
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 3.1e-78 295.4 194 72.2
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 69.6
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 70.6
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 71.6
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 71.6
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 7.0e-78 294.3 194 70.6
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 7.0e-78 294.3 194 70.6
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 7.0e-78 294.3 194 70.6
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 7.0e-78 294.3 194 69.6
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 71.1
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 70.1
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 71.6
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 70.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.2e-77 293.5 194 70.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.2e-77 293.5 194 70.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 2.0e-77 292.7 194 68.6
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.0e-77 292.7 194 70.1
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 2.0e-77 292.7 194 69.6
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 2.0e-77 292.7 194 70.6
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.0e-77 292.7 194 69.6
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.6e-77 292.4 194 70.6
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 2.6e-77 292.4 194 69.6
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.6e-77 292.4 194 69.6
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 3.5e-77 292.0 194 69.6
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 4.5e-77 291.6 194 69.1
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.9e-77 291.2 200 69.5
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.7e-77 290.8 194 72.7
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.0e-76 290.4 194 69.6
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.3e-76 290.0 194 69.1
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.3e-76 290.0 194 69.1
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.7e-76 289.7 194 70.1
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 2.9e-76 288.9 194 70.1
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 5.0e-76 288.1 194 69.6
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 5.0e-76 288.1 194 68.6
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 5.0e-76 288.1 195 68.2
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.5e-76 287.7 194 68.0
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 6.5e-76 287.7 194 68.0
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 6.5e-76 287.7 194 70.6
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 8.5e-76 287.3 214 65.9
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.1e-75 287.0 194 70.6
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.9e-75 286.2 214 65.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 3.2e-75 285.4 194 68.6
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 5.5e-75 284.6 194 67.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 7.2e-75 284.3 194 70.1
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.6e-74 283.1 194 68.0
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 2.1e-74 282.7 190 68.4
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 3.6e-74 282.0 192 69.8
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.0e-73 280.4 194 66.5
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.8e-73 279.6 210 64.8
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 3.0e-73 278.9 188 69.1
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 3.0e-73 278.9 187 69.0
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 3.0e-73 278.9 193 68.9
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 5.2e-73 278.1 178 71.9
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 8.8e-73 277.3 214 62.1
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 2.6e-72 275.8 235 58.7
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.3e-72 275.4 225 60.4
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.7e-71 271.9 194 67.5
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 4.8e-71 271.6 194 66.0
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 6.3e-71 271.2 176 71.0
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 3.1e-70 268.9 194 67.5
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.1e-70 268.5 174 71.8
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.3e-68 263.5 172 72.7
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 4.2e-67 258.5 210 60.5
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 5.5e-67 258.1 163 74.8
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 6.8e-65 251.1 297 46.1
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.7e-63 245.4 160 72.5
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 8.3e-63 244.2 163 69.3
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 1.4e-62 243.4 274 48.5
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.5e-59 233.4 121 92.6
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 3.6e-58 228.8 283 45.9
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 5.0e-52 208.4 178 57.9
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-50 203.8 120 78.3
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.6e-50 202.2 120 77.5
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.2e-49 198.4 191 53.4
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.7e-47 193.4 120 73.3
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.6e-45 186.8 132 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 3.9e-44 182.2 134 67.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 5.0e-44 181.8 123 69.1
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.3e-41 172.9 123 65.0
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 3.4e-40 169.1 173 52.0
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 3.7e-39 165.6 114 69.3
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.7e-39 165.6 114 66.7
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.3e-35 152.5 112 65.2
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.3e-35 151.4 93 76.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 9.5e-35 151.0 182 45.1
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 3.6e-34 149.1 98 69.4
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 5.4e-30 135.2 92 69.6
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 4.3e-27 125.6 88 68.2
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 4.3e-27 125.6 88 68.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 7.3e-27 124.8 73 78.1
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.1e-25 120.9 73 74.0
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.1e-25 120.9 73 74.0
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.1e-25 120.9 73 74.0
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.8e-25 120.2 76 69.7
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.1e-25 119.4 71 74.6
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.5e-21 105.9 66 71.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.2e-15 86.7 59 69.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 8.4e-15 84.7 96 44.8
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.5e-11 73.9 56 66.1
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-10 70.1 83 45.8
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-10 70.1 83 45.8
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 8.1e-10 68.2 46 67.4
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.1e-09 67.8 71 52.1
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 7.6e-08 61.6 56 55.4
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 9.9e-08 61.2 82 42.7


User provided reference genes

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