Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.4e-248 862.4 429 100.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.9e-216 755.7 429 86.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 1.4e-182 643.3 421 74.8
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 5.1e-182 641.3 389 79.4
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.0e-181 639.4 397 78.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 5.7e-181 637.9 379 82.1
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 9.7e-181 637.1 390 78.5
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.3e-180 636.7 397 77.1
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.3e-180 636.7 397 77.1
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 3.7e-180 635.2 429 72.7
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 6.3e-180 634.4 398 77.9
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 3.1e-179 632.1 394 77.2
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 5.3e-179 631.3 384 78.9
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 9.1e-179 630.6 384 78.9
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 1.5e-178 629.8 384 78.9
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.5e-178 629.8 384 78.1
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.5e-178 629.8 380 80.3
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.4e-178 628.6 389 78.7
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.0e-177 627.1 423 74.5
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.3e-177 626.7 422 72.7
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.3e-177 626.7 400 76.2
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.7e-177 626.3 382 79.3
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.7e-177 626.3 382 79.6
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-177 626.3 389 78.4
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.2e-177 625.9 422 73.0
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.9e-177 625.5 394 76.6
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 2.9e-177 625.5 379 79.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.8e-177 625.2 379 79.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 3.8e-177 625.2 402 76.4
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.8e-177 625.2 380 79.5
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 5.0e-177 624.8 384 78.4
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 5.0e-177 624.8 384 78.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 6.5e-177 624.4 379 79.7
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.1e-176 623.6 422 72.7
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.1e-176 623.6 423 72.3
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.4e-176 623.2 397 76.8
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.4e-176 623.2 402 76.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.4e-176 623.2 379 79.2
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.9e-176 622.9 395 76.7
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.9e-176 622.9 391 77.2
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.9e-176 622.9 398 77.1
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.9e-176 622.9 389 77.1
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.9e-176 622.9 389 77.4
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.5e-176 622.5 383 78.1
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 3.2e-176 622.1 420 73.8
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 3.2e-176 622.1 386 78.0
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 3.2e-176 622.1 389 77.9
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.2e-176 622.1 399 75.7
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 5.5e-176 621.3 383 78.1
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.5e-176 621.3 379 78.4
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 5.5e-176 621.3 379 78.4
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 5.5e-176 621.3 408 75.0
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 7.2e-176 620.9 396 77.3
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 7.2e-176 620.9 396 77.0
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 9.4e-176 620.5 396 77.0
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-175 620.2 379 78.4
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-175 620.2 396 76.5
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.2e-175 620.2 379 78.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.2e-175 620.2 379 79.4
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.6e-175 619.8 389 77.9
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 2.1e-175 619.4 380 79.2
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 3.6e-175 618.6 425 73.2
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 4.7e-175 618.2 379 78.4
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 4.7e-175 618.2 422 71.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.7e-175 618.2 379 78.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 6.1e-175 617.8 422 72.3
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 6.1e-175 617.8 379 78.6
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 6.1e-175 617.8 403 75.7
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.9e-175 617.5 379 78.4
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.8e-174 616.3 398 75.9
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.8e-174 616.3 391 76.7
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 3.0e-174 615.5 397 76.1
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.0e-174 615.5 394 77.4
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.9e-174 615.1 389 76.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 3.9e-174 615.1 418 72.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 5.1e-174 614.8 379 78.6
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 8.8e-174 614.0 412 73.8
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 8.8e-174 614.0 379 78.1
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.1e-173 613.6 382 77.7
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.5e-173 613.2 399 75.4
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.5e-173 613.2 396 75.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.5e-173 613.2 379 78.4
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.5e-173 613.2 410 74.1
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 2.0e-173 612.8 379 77.3
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.0e-173 612.8 379 77.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.0e-173 612.8 398 74.9
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.0e-173 612.8 378 78.0
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 3.3e-173 612.1 397 75.3
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 3.3e-173 612.1 379 77.8
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 7.4e-173 610.9 389 75.8
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 7.4e-173 610.9 396 74.0
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 9.7e-173 610.5 378 77.5
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 9.7e-173 610.5 379 77.0
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 9.7e-173 610.5 379 77.3
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.3e-172 610.1 378 77.5
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.4e-171 606.7 379 77.8
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.1e-171 605.1 398 73.9
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.2e-170 603.6 366 79.2
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.0e-170 602.8 399 74.9
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.0e-170 602.8 396 75.5
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.0e-169 600.5 379 76.5
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 2.9e-169 599.0 397 73.0
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 3.8e-169 598.6 379 76.0
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 5.0e-169 598.2 375 76.3
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 8.5e-169 597.4 399 74.9
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.2e-168 595.5 366 77.9
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 4.7e-167 591.7 448 66.5
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.4e-166 590.1 367 76.8
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.0e-166 589.0 379 73.9
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.5e-165 586.6 379 74.1
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.6e-165 585.9 367 76.6
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 5.3e-163 578.2 427 68.4
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 4.5e-162 575.1 352 78.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.0e-161 573.9 432 68.5
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 4.8e-156 555.1 348 77.0
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 5.9e-154 548.1 327 80.7
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.5e-152 543.5 367 72.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 2.7e-151 539.3 379 68.6
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 8.3e-148 527.7 378 69.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.2e-141 507.3 327 72.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 5.9e-138 495.0 294 81.6
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.5e-136 490.3 340 72.1
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.7e-129 466.8 288 78.1
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 7.3e-120 434.9 395 58.0
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 3.6e-119 432.6 299 70.9
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.6e-95 354.0 278 66.9
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.4e-94 350.9 267 67.0
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.4e-70 271.2 330 43.9
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 3.1e-70 270.0 330 43.6
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 7.4e-56 222.2 173 65.9
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 3.7e-47 193.4 118 82.2
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 6.3e-39 166.0 107 71.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 5.5e-27 126.3 84 69.0
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.2e-26 125.2 84 69.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 6.8e-25 119.4 125 56.0
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.5e-24 118.2 84 65.5
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 7.0e-22 109.4 110 52.7
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 3.6e-18 97.1 73 65.8
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 6.8e-17 92.8 76 61.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.4e-14 85.1 195 31.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.7e-12 78.2 58 67.2
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 6.8e-09 66.2 33 81.8
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.9e-06 58.2 67 49.3
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 2.4e-06 57.8 370 24.3


User provided reference genes

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