Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 7.4e-256 886.7 450 100.0
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 3.2e-86 323.2 477 45.5
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.7e-63 247.7 403 42.7
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 5.8e-19 99.8 120 41.7
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 5.8e-19 99.8 120 41.7
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.0e-18 99.0 120 41.7
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 1.3e-18 98.6 120 41.7
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 1.3e-18 98.6 120 41.7
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 2.2e-18 97.8 120 40.0
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 6.5e-18 96.3 120 39.2
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 6.5e-18 96.3 115 40.9
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 1.4e-17 95.1 202 30.2
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.9e-17 94.7 123 42.3
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 5.5e-17 93.2 120 37.5
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 7.1e-17 92.8 120 35.0
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 1.6e-16 91.7 120 35.8
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 1.6e-16 91.7 119 32.8
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 2.7e-16 90.9 123 32.5
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.7e-16 90.9 120 33.3
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 2.7e-16 90.9 123 35.8
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 3.5e-16 90.5 173 29.5
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 4.6e-16 90.1 123 39.0
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 6.0e-16 89.7 123 39.0
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 7.9e-16 89.4 120 36.7
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 1.8e-15 88.2 173 28.9
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 2.3e-15 87.8 120 34.2
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 2.3e-15 87.8 118 34.7
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 2.3e-15 87.8 120 35.0
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 2.3e-15 87.8 119 33.6
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 3.0e-15 87.4 117 37.6
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.9e-15 87.0 98 41.8
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 5.1e-15 86.7 120 34.2
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 5.1e-15 86.7 123 33.3
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 6.7e-15 86.3 123 34.1
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 6.7e-15 86.3 113 36.3
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 6.7e-15 86.3 123 33.3
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 6.7e-15 86.3 120 34.2
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 8.7e-15 85.9 118 36.4
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 8.7e-15 85.9 122 31.1
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 8.7e-15 85.9 203 27.1
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 8.7e-15 85.9 120 32.5
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 1.1e-14 85.5 123 32.5
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 1.1e-14 85.5 209 28.2
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 1.5e-14 85.1 122 31.1
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 1.5e-14 85.1 117 36.8
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 1.5e-14 85.1 120 32.5
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 1.9e-14 84.7 117 34.2
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 1.9e-14 84.7 117 35.9
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.3e-14 84.0 120 34.2
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 3.3e-14 84.0 117 36.8
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.3e-14 84.0 112 41.1
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.3e-14 84.0 126 35.7
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 3.3e-14 84.0 120 32.5
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 4.3e-14 83.6 119 32.8
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 4.3e-14 83.6 123 33.3
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 5.7e-14 83.2 116 32.8
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 5.7e-14 83.2 108 40.7
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 7.4e-14 82.8 119 33.6
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 7.4e-14 82.8 119 33.6
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 9.6e-14 82.4 119 33.6
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 9.6e-14 82.4 117 31.6
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 9.6e-14 82.4 120 30.8
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 1.3e-13 82.0 120 33.3
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 1.3e-13 82.0 119 32.8
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.3e-13 82.0 123 35.0
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.6e-13 81.6 122 33.6
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 1.6e-13 81.6 121 33.9
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 2.1e-13 81.3 122 34.4
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 2.1e-13 81.3 122 30.3
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 2.1e-13 81.3 120 31.7
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 2.1e-13 81.3 121 31.4
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 2.8e-13 80.9 120 30.8
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 2.8e-13 80.9 120 30.8
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 2.8e-13 80.9 122 31.1
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 3.7e-13 80.5 100 36.0
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 4.8e-13 80.1 204 27.5
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 4.8e-13 80.1 99 35.4
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 6.2e-13 79.7 87 41.4
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 6.2e-13 79.7 121 34.7
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 8.2e-13 79.3 206 27.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 8.2e-13 79.3 100 36.0
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 8.2e-13 79.3 99 38.4
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.1e-12 79.0 118 33.1
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 1.4e-12 78.6 118 30.5
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 1.4e-12 78.6 99 34.3
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 1.4e-12 78.6 139 30.2
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 2.4e-12 77.8 126 36.5
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 2.4e-12 77.8 126 36.5
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 3.1e-12 77.4 99 35.4
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 3.1e-12 77.4 99 35.4
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 3.1e-12 77.4 121 33.9
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.1e-12 77.4 118 33.1
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 5.3e-12 76.6 99 39.4
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 5.3e-12 76.6 99 36.4
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 1.2e-11 75.5 98 36.7
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.2e-11 75.5 122 29.5
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 1.2e-11 75.5 122 29.5
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.5e-11 75.1 97 35.1
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 3.4e-11 73.9 99 34.3
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 3.4e-11 73.9 120 30.0
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 1.3e-10 72.0 99 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 3.2e-09 67.4 74 37.8
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 7.1e-09 66.2 90 35.6
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 3.5e-08 63.9 98 33.7
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 3.5e-08 63.9 72 36.1
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 3.0e-07 60.8 80 32.5
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 5.1e-07 60.1 97 33.0
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 2.5e-06 57.8 75 34.7
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 7.4e-06 56.2 71 35.2


User provided reference genes

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