Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.9e-309 1063.9 519 100.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-239 833.2 565 76.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.6e-222 776.2 555 71.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.2e-213 744.6 552 68.7
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.2e-213 744.6 552 68.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 8.9e-213 743.8 551 69.1
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 4.4e-212 741.5 566 66.6
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 7.5e-212 740.7 567 67.2
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.3e-211 740.0 558 68.3
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.7e-211 739.6 558 68.1
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 2.9e-211 738.8 551 68.8
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.9e-211 738.8 551 68.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.9e-211 738.8 551 68.8
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.9e-211 738.8 553 68.5
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.9e-211 738.8 553 68.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 3.7e-211 738.4 558 67.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 3.7e-211 738.4 567 67.0
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 4.9e-211 738.0 551 68.8
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 4.9e-211 738.0 551 68.4
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.9e-211 738.0 551 68.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 4.9e-211 738.0 551 68.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 4.9e-211 738.0 566 67.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.4e-211 737.6 551 68.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 8.3e-211 737.3 551 68.1
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 8.3e-211 737.3 558 67.6
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 8.3e-211 737.3 566 67.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 8.3e-211 737.3 556 67.8
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.1e-210 736.9 553 68.2
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.1e-210 736.9 553 68.2
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.4e-210 736.5 551 68.4
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.4e-210 736.5 566 67.3
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.9e-210 736.1 551 68.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.9e-210 736.1 551 68.2
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 2.4e-210 735.7 553 68.0
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 3.2e-210 735.3 553 67.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 4.1e-210 734.9 551 67.9
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 4.1e-210 734.9 550 68.7
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 4.1e-210 734.9 558 67.4
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 4.1e-210 734.9 553 67.6
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 4.1e-210 734.9 557 67.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.1e-210 734.9 560 67.5
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.4e-210 734.6 558 67.4
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.4e-210 734.6 566 67.0
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 5.4e-210 734.6 551 68.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.4e-210 734.6 553 67.8
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.0e-210 734.2 551 68.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 7.0e-210 734.2 551 67.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 7.0e-210 734.2 559 67.1
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 7.0e-210 734.2 558 67.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 9.2e-210 733.8 553 67.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 9.2e-210 733.8 558 67.6
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.2e-209 733.4 553 67.6
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.6e-209 733.0 551 68.2
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.0e-209 732.6 553 67.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.0e-209 732.6 553 67.5
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.5e-209 731.9 553 67.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 3.5e-209 731.9 558 67.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 7.8e-209 730.7 551 67.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.0e-208 730.3 553 66.9
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.0e-208 730.3 553 66.9
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.0e-208 730.3 553 67.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.0e-208 730.3 553 67.6
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.3e-208 729.9 553 67.1
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.7e-208 729.6 553 67.1
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.7e-208 729.6 550 67.8
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.7e-208 729.6 558 67.0
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.7e-208 729.6 553 67.5
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.3e-208 729.2 551 67.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.0e-208 728.8 551 67.2
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.0e-208 728.8 551 67.5
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 3.0e-208 728.8 553 67.1
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.0e-208 728.8 553 66.9
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.9e-208 728.4 587 64.4
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 5.0e-208 728.0 553 67.1
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 5.0e-208 728.0 553 66.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 5.0e-208 728.0 553 66.7
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 5.0e-208 728.0 553 66.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 5.0e-208 728.0 553 67.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 8.6e-208 727.2 551 67.7
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.5e-207 726.5 553 67.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.9e-207 726.1 565 66.4
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.3e-207 725.3 551 66.8
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 3.3e-207 725.3 553 66.9
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 5.6e-207 724.5 553 67.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.6e-207 724.5 554 66.4
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 7.3e-207 724.2 594 64.3
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.8e-206 722.2 583 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 3.6e-206 721.8 538 67.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 8.1e-206 720.7 566 65.2
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 4.4e-204 714.9 549 66.7
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 8.3e-203 710.7 579 63.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.1e-202 710.3 519 69.4
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.0e-200 702.2 606 61.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.4e-197 693.3 564 64.5
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 4.4e-196 688.3 505 68.3
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.8e-196 688.0 560 64.5
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.9e-186 656.4 433 74.8
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 3.5e-185 652.1 433 74.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.5e-185 652.1 538 61.7
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.3e-183 645.6 494 67.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.0e-176 622.5 516 63.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.4e-175 617.8 507 63.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.6e-174 616.7 545 59.6
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 6.4e-171 604.7 404 73.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.4e-170 603.6 543 59.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 8.7e-168 594.3 553 58.4
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.3e-159 565.5 414 69.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-155 554.3 499 58.9
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.5e-151 539.7 500 58.8
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.2e-146 521.5 495 58.4
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.4e-144 517.3 546 52.9
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-144 516.9 495 58.0
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 7.4e-143 511.5 327 75.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.7e-142 510.4 382 67.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.0e-140 503.4 550 52.5
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.6e-132 477.2 310 76.8
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 6.5e-115 418.7 502 49.8
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.1e-106 391.3 260 73.1
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.3e-99 367.9 287 65.5
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-98 364.8 401 51.6
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.7e-94 349.7 499 43.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-92 344.4 364 53.6
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.7e-86 323.2 464 44.4
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 3.2e-85 320.1 515 40.4
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.0e-83 315.1 196 78.1
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-83 313.9 516 40.5
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.4e-79 300.1 293 57.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.4e-79 300.1 167 82.6
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 4.4e-79 299.7 298 55.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.9e-78 297.0 174 79.3
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 8.4e-78 295.4 322 51.2
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.4e-72 277.3 154 79.9
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 8.4e-70 268.9 248 59.3
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 3.6e-65 253.4 266 54.1
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.8e-65 253.1 212 63.2
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.1e-64 251.9 261 52.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-60 238.4 287 50.2
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.0e-59 235.3 160 73.1
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-59 233.8 226 57.5
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 8.1e-57 225.7 227 56.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-56 225.3 545 32.8
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 9.6e-50 202.2 154 66.9
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.5e-34 151.0 151 55.6
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 9.7e-34 149.1 182 49.5
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 4.6e-28 130.2 150 50.0
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 6.1e-28 129.8 148 48.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-21 108.6 103 61.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.0e-19 100.9 154 40.9
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-17 94.7 158 38.6
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 6.3e-17 93.2 50 86.0
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-16 92.4 51 84.3
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 4.1e-16 90.5 79 58.2
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 3.5e-15 87.4 105 46.7
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 9.4e-13 79.3 47 78.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 3.0e-11 74.3 46 76.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-11 74.3 59 61.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 4.0e-11 73.9 76 55.3
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 8.2e-09 66.2 88 50.0
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.1e-08 65.9 48 66.7
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-08 65.1 45 68.9


User provided reference genes

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