Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.2e-75 284.6 148 100.0
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 3.5e-29 132.1 123 54.5
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.6e-26 123.2 143 45.5
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.3e-25 119.4 139 45.3
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.8e-25 117.9 137 42.3
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 8.9e-25 117.5 139 43.9
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.6e-24 115.9 137 43.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 4.4e-24 115.2 117 47.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 7.5e-24 114.4 147 43.5
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 9.8e-24 114.0 137 43.8
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 9.8e-24 114.0 137 43.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.2e-23 112.8 144 44.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.9e-23 112.5 128 46.9
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.7e-23 112.1 146 43.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.7e-23 112.1 148 41.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 4.9e-23 111.7 145 41.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.1e-22 110.5 148 40.5
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.4e-22 110.2 136 38.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.4e-22 109.4 122 44.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.4e-22 109.4 135 40.7
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.4e-22 109.4 135 40.7
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 3.2e-22 109.0 143 44.8
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.1e-22 108.6 129 41.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.1e-22 108.6 145 42.1
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 5.4e-22 108.2 123 45.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 9.2e-22 107.5 139 41.0
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-21 107.1 133 42.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.2e-21 107.1 147 39.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-21 107.1 151 38.4
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-21 106.7 149 41.6
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.6e-21 106.7 131 43.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.1e-21 106.3 146 39.0
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.7e-21 105.9 139 43.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 6.0e-21 104.8 139 42.4
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 6.0e-21 104.8 146 40.4
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 7.8e-21 104.4 142 40.8
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.8e-21 104.4 132 43.2
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.8e-21 104.4 146 39.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 7.8e-21 104.4 140 42.9
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.0e-20 104.0 160 37.5
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.0e-20 104.0 131 43.5
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.0e-20 104.0 123 41.5
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.0e-20 104.0 148 40.5
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.3e-20 103.6 126 43.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.3e-20 103.6 145 40.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.7e-20 103.2 151 40.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.7e-20 103.2 140 43.6
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.7e-20 103.2 146 38.4
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.3e-20 102.8 132 42.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.3e-20 102.8 151 41.7
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.0e-20 102.4 143 42.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.0e-20 102.4 146 37.7
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.0e-20 102.4 126 41.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 3.0e-20 102.4 146 37.7
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.9e-20 102.1 139 41.0
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.9e-20 102.1 144 40.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.1e-20 101.7 137 43.8
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.1e-20 101.7 137 43.8
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.1e-20 101.7 141 40.4
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 5.1e-20 101.7 130 42.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 5.1e-20 101.7 143 38.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 5.1e-20 101.7 138 37.7
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 6.6e-20 101.3 159 37.1
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 8.6e-20 100.9 147 35.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.1e-19 100.5 146 37.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-19 100.5 137 43.1
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-19 100.5 141 40.4
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.1e-19 100.5 148 39.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.1e-19 100.5 148 40.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-19 100.1 137 40.9
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-19 100.1 137 40.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.9e-19 99.8 146 39.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.5e-19 99.4 146 39.7
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 3.3e-19 99.0 135 43.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 3.3e-19 99.0 135 43.0
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 3.3e-19 99.0 139 38.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.3e-19 99.0 139 41.7
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 4.3e-19 98.6 146 37.0
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.3e-19 98.6 146 39.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.6e-19 98.2 152 38.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 5.6e-19 98.2 135 40.0
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 7.3e-19 97.8 168 36.9
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.3e-19 97.8 146 37.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 9.5e-19 97.4 149 38.9
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 9.5e-19 97.4 120 42.5
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.2e-18 97.1 125 41.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.6e-18 96.7 142 38.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.6e-18 96.7 154 37.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.6e-18 96.7 148 37.2
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.6e-18 96.7 158 36.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.1e-18 96.3 119 40.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.6e-18 95.5 146 36.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.7e-18 95.1 92 50.0
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 8.1e-18 94.4 133 39.8
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 8.1e-18 94.4 140 35.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-17 94.0 140 42.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-17 94.0 140 42.1
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.1e-17 94.0 134 41.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-17 93.6 135 43.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.8e-17 93.2 152 37.5
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.8e-17 93.2 107 44.9
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.8e-17 93.2 134 37.3
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-17 92.8 134 41.8
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.3e-17 92.8 147 36.7
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.3e-17 92.8 139 38.1
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 4.0e-17 92.0 135 40.7
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 5.2e-17 91.7 138 42.8
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 5.2e-17 91.7 152 36.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 8.9e-17 90.9 139 37.4
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.2e-16 90.5 139 36.7
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.5e-16 90.1 99 50.5
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.0e-16 89.7 92 46.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-16 89.4 137 42.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.4e-16 89.0 92 47.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.4e-16 89.0 151 37.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.4e-16 88.6 145 33.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.4e-16 88.6 153 35.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.5e-16 87.8 146 34.9
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.3e-15 87.0 145 37.9
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-15 86.7 139 36.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.7e-15 85.5 90 44.4
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 8.3e-15 84.3 152 38.2
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.4e-14 83.6 85 47.1
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.4e-14 83.6 164 34.1
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 4.1e-14 82.0 136 36.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 4.1e-14 82.0 136 36.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 4.1e-14 82.0 136 36.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 5.4e-14 81.6 91 42.9
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.1e-13 79.7 94 41.5
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 3.5e-13 79.0 90 44.4
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.7e-12 76.6 166 33.1
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.3e-12 76.3 146 31.5
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.0e-12 75.9 87 43.7
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 5.1e-12 75.1 112 33.9
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 5.1e-12 75.1 105 38.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.6e-12 74.7 146 35.6
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 4.3e-11 72.0 119 31.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.1e-10 69.7 115 33.0
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-10 68.9 131 33.6
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 8.1e-10 67.8 72 45.8
Cre13.g564550 Chlamydomonas reinhardtii HOM05D004569 ORTHO05D005333 4.0e-09 65.5 83 41.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.2e-08 63.9 92 40.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.5e-08 63.5 60 50.0
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-08 63.5 146 31.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.6e-08 62.8 142 30.3
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 3.4e-08 62.4 70 42.9
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.4e-08 62.0 83 38.6
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 9.9e-08 60.8 97 36.1


User provided reference genes

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