Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.2e-247 859.4 427 100.0
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 7.1e-216 753.8 429 86.9
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.2e-185 652.5 392 80.9
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.9e-185 652.1 379 83.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 9.3e-184 647.1 433 73.2
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 9.3e-184 647.1 389 79.9
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.8e-182 642.9 431 73.8
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 2.3e-182 642.5 390 78.5
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 5.1e-182 641.3 382 80.4
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 8.7e-182 640.6 382 80.9
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 8.7e-182 640.6 428 74.8
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.1e-181 640.2 389 79.2
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 2.5e-181 639.0 418 74.9
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.3e-181 638.6 389 78.7
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.3e-181 638.6 389 78.7
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 9.6e-181 637.1 384 78.9
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.6e-180 636.3 389 79.9
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 2.1e-180 636.0 429 72.7
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 2.1e-180 636.0 380 80.8
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 2.8e-180 635.6 399 77.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.8e-180 635.6 399 77.9
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 2.8e-180 635.6 399 77.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 2.8e-180 635.6 398 78.1
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.8e-180 635.6 380 80.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.8e-180 635.6 379 80.7
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 2.8e-180 635.6 389 78.7
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 3.7e-180 635.2 384 79.2
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 6.2e-180 634.4 419 74.5
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 8.2e-180 634.0 379 80.2
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 8.2e-180 634.0 379 80.7
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.4e-179 633.3 386 79.0
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.4e-179 633.3 385 78.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.8e-179 632.9 431 74.2
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.8e-179 632.9 430 74.2
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.4e-179 632.5 432 72.9
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 2.4e-179 632.5 404 75.5
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 2.4e-179 632.5 382 80.1
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 2.4e-179 632.5 389 78.1
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 2.4e-179 632.5 430 72.3
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.4e-179 632.5 431 74.0
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 3.1e-179 632.1 389 78.4
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.0e-179 631.7 399 77.2
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 5.3e-179 631.3 402 77.1
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.3e-179 631.3 399 76.9
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 6.9e-179 630.9 419 74.2
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 6.9e-179 630.9 422 74.9
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 6.9e-179 630.9 379 79.9
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 9.0e-179 630.6 403 76.9
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-178 630.2 429 72.3
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-178 630.2 409 75.6
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-178 630.2 379 79.9
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.2e-178 630.2 379 79.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.5e-178 629.8 383 79.4
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 1.5e-178 629.8 389 78.4
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.6e-178 629.0 445 70.3
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.6e-178 629.0 416 75.2
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 3.4e-178 628.6 379 79.4
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 3.4e-178 628.6 411 75.7
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 3.4e-178 628.6 432 73.6
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 3.4e-178 628.6 380 78.9
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 5.8e-178 627.9 429 71.3
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 5.8e-178 627.9 379 79.4
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 5.8e-178 627.9 407 75.4
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 5.8e-178 627.9 429 72.0
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 5.8e-178 627.9 414 74.9
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.8e-178 627.9 379 79.9
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 5.8e-178 627.9 400 77.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 7.6e-178 627.5 430 73.5
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.6e-178 627.5 399 76.9
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.0e-177 627.1 407 75.4
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.0e-177 627.1 400 76.8
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.0e-177 627.1 378 79.9
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.3e-177 626.7 399 76.4
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.3e-177 626.7 379 79.7
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.7e-177 626.3 387 79.3
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.2e-177 625.9 403 76.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.2e-177 625.9 428 72.7
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 2.9e-177 625.5 378 79.6
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.9e-177 625.5 419 74.2
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 2.9e-177 625.5 379 79.2
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 3.8e-177 625.2 429 71.1
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 4.9e-177 624.8 431 71.7
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 6.5e-177 624.4 379 78.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.1e-176 623.6 389 77.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 1.4e-176 623.2 397 77.1
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.4e-176 623.2 380 79.2
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.9e-176 622.9 414 73.7
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.9e-176 622.9 397 77.1
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.9e-176 622.9 389 77.1
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 3.2e-176 622.1 424 73.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 3.2e-176 622.1 429 71.6
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.2e-176 622.1 410 74.4
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 3.2e-176 622.1 379 78.9
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 4.2e-176 621.7 409 74.3
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 4.2e-176 621.7 415 74.5
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 5.5e-176 621.3 389 77.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 7.9e-175 617.5 418 73.7
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 3.3e-173 612.1 379 77.8
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 4.3e-173 611.7 425 71.3
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 7.4e-173 610.9 368 79.3
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 7.4e-173 610.9 389 76.3
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 9.7e-173 610.5 402 74.4
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.6e-172 609.8 368 79.6
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 3.7e-172 608.6 379 77.3
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 3.1e-171 605.5 375 77.1
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 4.5e-170 601.7 448 67.6
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.0e-169 600.5 420 72.1
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.8e-169 598.6 379 75.2
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 6.5e-169 597.8 368 78.0
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 3.0e-166 589.0 367 76.6
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.1e-165 587.0 379 74.7
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.3e-165 585.5 352 80.1
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.7e-164 582.0 386 73.8
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 5.3e-163 578.2 431 69.1
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 7.4e-157 557.8 340 78.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.3e-156 557.0 379 71.2
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.4e-155 553.5 369 73.4
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.8e-155 553.1 327 80.7
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 8.2e-148 527.7 378 69.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 9.4e-144 514.2 327 73.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.1e-139 500.7 343 74.1
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.1e-139 498.8 340 72.4
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.7e-129 466.8 288 77.8
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.6e-119 432.6 439 53.8
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 6.1e-119 431.8 299 70.6
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 8.6e-97 358.2 280 66.4
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.5e-96 357.5 267 67.8
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.1e-72 278.1 330 44.2
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 2.8e-71 273.5 330 43.3
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.0e-57 226.9 173 68.2
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 5.3e-46 189.5 117 80.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 7.4e-40 169.1 107 72.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 5.0e-28 129.8 84 71.4
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.5e-27 128.3 84 70.2
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 7.2e-27 125.9 84 71.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 8.0e-26 122.5 125 56.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.2e-21 108.6 57 78.9
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.1e-19 102.1 76 65.8
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 2.3e-17 94.4 76 63.2
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.4e-14 84.3 63 68.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.1e-14 83.6 195 30.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 8.9e-09 65.9 40 67.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.1e-06 58.9 67 50.7


User provided reference genes

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