Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 2.5e-203 711.8 351 100.0
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 3.2e-97 359.4 353 51.8
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 9.0e-84 314.7 367 44.4
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 4.5e-83 312.4 372 44.9
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 1.0e-82 311.2 401 41.1
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.3e-82 310.8 379 43.8
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.7e-82 310.5 389 43.4
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 4.9e-82 308.9 382 41.1
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 4.9e-82 308.9 372 44.4
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 6.5e-82 308.5 379 43.5
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 6.5e-82 308.5 346 44.2
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 8.4e-82 308.1 379 42.2
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.1e-81 307.8 373 44.2
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.9e-81 307.0 368 45.1
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 2.5e-81 306.6 379 43.0
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 4.2e-81 305.8 358 44.4
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.2e-81 305.8 381 41.5
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 4.2e-81 305.8 388 41.8
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 7.1e-81 305.1 385 42.9
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 7.1e-81 305.1 339 45.4
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 2.1e-80 303.5 385 42.9
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.5e-80 302.8 379 43.3
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 4.6e-80 302.4 382 42.4
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 7.9e-80 301.6 381 41.7
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.0e-79 301.2 370 42.7
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.3e-79 300.8 374 42.2
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.3e-79 300.8 361 43.5
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.8e-79 300.4 370 42.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.8e-79 300.4 361 42.7
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 2.3e-79 300.1 365 42.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.3e-79 300.1 382 42.7
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 3.9e-79 299.3 384 41.4
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 3.9e-79 299.3 374 42.5
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 5.1e-79 298.9 382 42.7
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 6.7e-79 298.5 408 39.5
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 6.7e-79 298.5 386 41.7
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 6.7e-79 298.5 383 42.3
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 8.7e-79 298.1 388 41.8
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 8.7e-79 298.1 378 40.7
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.5e-78 297.4 385 40.5
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.5e-78 296.6 385 41.3
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.5e-78 296.6 381 41.7
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 3.3e-78 296.2 367 43.3
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.3e-78 296.2 398 40.2
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.3e-78 295.8 384 41.4
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 4.3e-78 295.8 377 40.8
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 7.4e-78 295.0 379 40.9
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.6e-77 293.9 382 41.6
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 2.8e-77 293.1 371 43.1
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 4.8e-77 292.4 378 41.5
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 6.2e-77 292.0 386 41.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.1e-76 291.2 389 41.1
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.1e-76 291.2 412 39.1
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 2.4e-76 290.0 381 40.7
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.4e-76 290.0 383 40.2
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 2.4e-76 290.0 384 39.3
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 3.1e-76 289.7 383 40.7
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.1e-76 289.3 366 42.1
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 4.1e-76 289.3 380 40.0
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 6.9e-76 288.5 383 40.5
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 9.0e-76 288.1 396 40.4
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.2e-75 287.7 381 40.7
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.0e-75 287.0 383 39.9
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.0e-75 287.0 383 39.9
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 2.2e-74 283.5 381 40.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 2.2e-74 283.5 347 39.5
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 2.9e-74 283.1 381 40.4
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 5.0e-74 282.3 414 38.2
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 6.5e-74 282.0 371 41.5
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.2e-72 277.7 385 40.8
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.6e-72 277.3 400 38.8
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 7.9e-72 275.0 452 37.4
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.0e-71 274.6 427 37.7
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.3e-71 274.2 384 37.0
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.3e-71 274.2 425 37.9
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 1.9e-70 270.4 388 37.9
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.6e-69 267.3 338 43.5
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 2.2e-69 266.9 357 38.4
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 8.2e-69 265.0 352 41.8
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.4e-68 264.2 405 35.6
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.0e-66 258.1 349 40.4
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 8.5e-66 255.0 472 33.9
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 3.6e-64 249.6 495 32.5
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 7.9e-64 248.4 373 37.8
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 3.9e-63 246.1 384 37.2
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 5.7e-62 242.3 380 37.1
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.0e-59 233.8 278 43.9
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.5e-57 226.9 385 36.4
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.2e-57 226.1 294 40.5
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 1.9e-49 200.7 299 36.8
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.9e-49 200.7 492 29.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 3.6e-48 196.4 246 41.9
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 2.8e-45 186.8 205 46.3
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.1e-44 184.9 272 37.1
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.0e-42 178.3 265 36.6
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.8e-42 176.4 557 26.6
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.2e-40 171.4 288 34.7
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 6.1e-40 169.1 236 41.5
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 2.3e-39 167.2 420 29.3
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 4.0e-39 166.4 337 33.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 5.7e-38 162.5 167 47.9
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.1e-36 158.3 167 44.9
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.8e-36 157.5 220 40.9
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 7.0e-36 155.6 226 38.1
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 2.7e-35 153.7 457 27.4
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 7.7e-35 152.1 149 50.3
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.7e-34 151.0 224 37.5
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.9e-34 150.2 391 29.7
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.9e-34 150.2 212 39.2
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.6e-32 143.3 408 30.4
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.6e-32 143.3 390 32.3
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.0e-31 141.7 340 29.4
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 6.8e-31 139.0 140 47.9
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 9.8e-30 135.2 118 47.5
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 9.1e-28 128.6 122 49.2
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 4.5e-27 126.3 121 51.2
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.7e-24 116.3 112 50.9
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.5e-22 111.3 98 54.1
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 6.4e-21 105.9 325 28.0
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.2e-19 101.7 118 43.2
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.6e-14 84.0 140 30.7
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.4e-12 77.4 78 46.2
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 3.9e-10 70.1 89 41.6
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 6.6e-10 69.3 83 39.8
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 6.6e-10 69.3 83 39.8
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 7.3e-09 65.9 104 39.4
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 9.5e-09 65.5 345 20.9
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.2e-08 65.1 117 37.6
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 4.7e-08 63.2 310 25.2
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 3.1e-07 60.5 317 24.6
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 3.1e-07 60.5 348 21.0
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 4.0e-07 60.1 345 21.4
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 4.0e-07 60.1 344 20.6
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 5.2e-07 59.7 339 22.1
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 6.8e-07 59.3 344 20.9
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 6.8e-07 59.3 343 21.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 6.8e-07 59.3 51 51.0
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 8.9e-07 58.9 341 22.0
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 8.9e-07 58.9 341 20.8
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.2e-06 58.5 197 24.9
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.2e-06 58.5 322 21.4
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 1.2e-06 58.5 341 20.8
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 1.5e-06 58.2 313 22.4
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.0e-06 57.8 58 41.4
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 3.4e-06 57.0 344 20.6
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 3.4e-06 57.0 344 20.9
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 4.4e-06 56.6 318 23.9
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 4.4e-06 56.6 351 20.8
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 4.4e-06 56.6 351 20.8
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.8e-06 56.2 315 23.2
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 7.5e-06 55.8 202 23.8
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 7.5e-06 55.8 317 23.3
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 7.5e-06 55.8 315 22.9


User provided reference genes

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