Gene: Sopen11g005650

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g005650
  • Transcript Identifier Sopen11g005650.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 3997174-4004157 : negative

Gene Family Information

  • ID HOM05D005790
  • #Genes/#Species 135/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g005650.1

Descriptions

  • Description Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | EMBRYO DEFECTIVE 2757 (EMB2757) | FUNCTIONS IN: nucleotide binding | INVOLVED IN: acquisition of desiccation tolerance, embryo development, embryo development ending in seed dormancy | LOCATED IN: CUL4 RING ubiquitin ligase complex | EXPRESSED IN: stem, rosette leaf, fruit, root, cultured cell | EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000280
ISO
PLAZA Integrative Orthologyregulation of root development AT4G29860
GO:0010044
ISO
PLAZA Integrative Orthologyresponse to aluminum ion AT4G29860
GO:0072718
ISO
PLAZA Integrative Orthologyresponse to cisplatin AT4G29860
GO:0031570
ISO
PLAZA Integrative OrthologyDNA integrity checkpoint signaling AT4G29860
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G29860
GO:0006282
ISO
PLAZA Integrative Orthologyregulation of DNA repair AT4G29860
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT4G29860
GO:0048700
ISO
PLAZA Integrative Orthologyacquisition of desiccation tolerance in seed AT4G29860
GO:0009663
ISO
PLAZA Integrative Orthologyplasmodesma organization AT4G29860
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT4G29860
GO:0051726
ISO
PLAZA Integrative Orthologyregulation of cell cycle AT4G29860
GO:0010497
ISO
PLAZA Integrative Orthologyplasmodesmata-mediated intercellular transport AT4G29860
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT4G29860

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G29860
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G29860

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
13.3.4.5.7 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (TANMEI)