Gene: AT4G29860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G29860
  • Transcript Identifier AT4G29860.1
  • Gene Type Coding gene
  • Location Chr4 : 14603296-14605704 : negative

Gene Family Information

  • ID HOM05D005790
  • #Genes/#Species 135/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G29860.1
  • symbol EMB2757
  • Alias ALT2,ALUMINUM TOLERANT 2,AtDSE1,DSE1,DECREASED SIZE EXCLUSION LIMIT 1,TAN,TANMEI
  • full_name EMBRYO DEFECTIVE 2757
  • uniprot Q3MV14

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description EMBRYO DEFECTIVE 2757 (EMB2757); FUNCTIONS IN: nucleotide binding; INVOLVED IN: acquisition of desiccation tolerance, embryo development, embryo development ending in seed dormancy; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: stem, rosette leaf, fruit, root, cultured cell; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 24053 Blast hits to 12842 proteins in 620 species: Archae - 42; Bacteria - 6408; Metazoa - 6694; Fungi - 5230; Plants - 2600; Viruses - 0; Other Eukaryotes - 3079 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051726
IMP
Gene Ontologyregulation of cell cycle1
GO:0007049
IEA
GOA Databasecell cycle
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006974
IDA
Gene Ontologycellular response to DNA damage stimulus1
GO:0048481
IMP
Gene Ontologyplant ovule development2
GO:0010497
IMP
Gene Ontologyplasmodesmata-mediated intercellular transport2
GO:0009663
IMP
Gene Ontologyplasmodesma organization2
GO:0009555
IMP
Gene Ontologypollen development2
GO:2000280
IMP
Gene Ontologyregulation of root development1
GO:0072718
IMP
Gene Ontologyresponse to cisplatin1
GO:0031570
IMP
Gene OntologyDNA integrity checkpoint signaling1
GO:0010044
IMP
Gene Ontologyresponse to aluminum ion1
GO:0006282
IMP
Gene Ontologyregulation of DNA repair1
GO:0048700
IMP
Gene Ontologyacquisition of desiccation tolerance in seed3
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm1
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
Mapman id Description
13.3.4.5.7 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (TANMEI)