Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 6.6e-249 863.6 443 100.0
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 3.2e-102 376.3 398 57.3
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.8e-82 310.1 477 45.5
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 3.0e-15 87.4 120 39.2
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 3.0e-15 87.4 120 39.2
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 5.0e-15 86.7 120 39.2
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 5.0e-15 86.7 120 37.5
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 6.6e-15 86.3 120 39.2
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 6.6e-15 86.3 120 39.2
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 2.1e-13 81.3 120 36.7
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 3.6e-13 80.5 114 35.1
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.6e-13 80.5 237 29.5
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 8.0e-13 79.3 120 35.0
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 2.3e-12 77.8 123 35.0
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 2.3e-12 77.8 165 29.7
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.0e-12 77.0 98 39.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 4.0e-12 77.0 120 33.3
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 5.2e-12 76.6 111 34.2
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 5.2e-12 76.6 115 35.7
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 5.2e-12 76.6 120 35.0
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 8.9e-12 75.9 223 26.9
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 1.2e-11 75.5 202 29.7
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.2e-11 75.5 119 32.8
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 1.2e-11 75.5 118 33.9
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 2.0e-11 74.7 105 33.3
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 2.0e-11 74.7 206 29.6
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 2.0e-11 74.7 113 32.7
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 2.6e-11 74.3 218 26.1
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 3.4e-11 73.9 120 32.5
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.4e-11 73.9 113 34.5
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 3.4e-11 73.9 184 29.3
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 3.4e-11 73.9 184 29.3
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 4.4e-11 73.6 113 32.7
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 4.4e-11 73.6 116 35.3
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 5.8e-11 73.2 118 34.7
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 5.8e-11 73.2 212 25.5
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 7.5e-11 72.8 120 32.5
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 7.5e-11 72.8 113 33.6
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 7.5e-11 72.8 120 33.3
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 7.5e-11 72.8 116 34.5
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 9.8e-11 72.4 111 34.2
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 9.8e-11 72.4 113 32.7
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.3e-10 72.0 115 33.0
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 1.7e-10 71.6 93 38.7
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 2.2e-10 71.2 93 37.6
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 2.2e-10 71.2 113 31.9
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 2.2e-10 71.2 216 25.0
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 2.9e-10 70.9 109 35.8
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 2.9e-10 70.9 113 34.5
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 2.9e-10 70.9 113 32.7
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 3.7e-10 70.5 110 34.5
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 4.9e-10 70.1 100 42.0
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.9e-10 70.1 100 42.0
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 4.9e-10 70.1 115 34.8
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 6.4e-10 69.7 215 26.5
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 8.3e-10 69.3 123 31.7
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 8.3e-10 69.3 113 32.7
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 8.3e-10 69.3 113 32.7
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 8.3e-10 69.3 113 34.5
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 1.1e-09 68.9 110 33.6
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.1e-09 68.9 118 37.3
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.1e-09 68.9 115 40.0
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 1.1e-09 68.9 111 30.6
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 1.1e-09 68.9 121 35.5
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 1.4e-09 68.6 119 32.8
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.9e-09 68.2 113 31.9
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.9e-09 68.2 113 31.9
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 1.9e-09 68.2 116 32.8
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 1.9e-09 68.2 110 33.6
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.9e-09 68.2 192 24.5
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 2.4e-09 67.8 116 31.0
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 2.4e-09 67.8 110 33.6
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 2.4e-09 67.8 118 37.3
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 2.4e-09 67.8 116 31.9
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 3.2e-09 67.4 120 31.7
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 4.1e-09 67.0 111 29.7
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 4.1e-09 67.0 113 31.0
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 4.1e-09 67.0 78 41.0
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 5.4e-09 66.6 100 37.0
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 5.4e-09 66.6 114 31.6
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 5.4e-09 66.6 92 37.0
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 9.2e-09 65.9 94 38.3
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.2e-08 65.5 119 32.8
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 1.2e-08 65.5 121 29.8
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 1.2e-08 65.5 117 33.3
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 1.2e-08 65.5 115 29.6
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 1.6e-08 65.1 93 34.4
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 1.6e-08 65.1 91 36.3
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.0e-08 64.7 93 33.3
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 2.0e-08 64.7 100 34.0
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 2.7e-08 64.3 219 26.0
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 3.5e-08 63.9 122 29.5
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 4.6e-08 63.5 98 35.7
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 6.0e-08 63.2 93 34.4
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 6.0e-08 63.2 93 32.3
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 7.8e-08 62.8 115 33.0
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 7.8e-08 62.8 122 28.7
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.7e-07 61.6 82 39.0
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.7e-07 61.6 82 39.0
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.7e-07 61.6 116 31.0
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.7e-07 61.6 91 33.0
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 3.9e-07 60.5 113 30.1
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 5.0e-07 60.1 69 40.6
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.5e-06 58.5 115 27.8
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 1.5e-06 58.5 115 27.8
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 2.5e-06 57.8 58 41.4
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 4.3e-06 57.0 98 35.7


User provided reference genes

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