Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.8e-190 669.1 339 100.0
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.5e-67 260.8 234 58.5
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 2.9e-63 246.5 299 45.8
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 5.5e-62 242.3 264 46.6
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 7.2e-62 241.9 269 47.2
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.1e-61 238.8 284 43.7
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 6.1e-61 238.8 291 45.4
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 6.1e-61 238.8 268 46.3
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.8e-60 237.3 254 46.1
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 8.8e-60 235.0 249 46.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.0e-59 233.8 268 45.5
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.3e-59 233.0 297 43.4
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.7e-59 232.3 268 45.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.7e-58 230.7 310 42.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.7e-58 229.6 303 42.2
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 8.2e-58 228.4 249 47.4
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-57 228.0 264 46.6
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.1e-57 228.0 299 42.1
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-57 228.0 268 46.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.4e-57 227.6 264 46.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-57 227.6 264 46.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.8e-57 227.3 306 40.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 4.1e-57 226.1 267 46.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 5.3e-57 225.7 249 44.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 5.3e-57 225.7 249 46.2
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.9e-57 225.3 265 46.8
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.5e-56 224.2 298 40.3
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.6e-56 223.4 247 44.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.4e-56 223.0 308 40.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 4.5e-56 222.6 246 47.2
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 4.5e-56 222.6 314 41.4
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 5.9e-56 222.2 268 45.5
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.9e-56 222.2 251 45.0
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 7.7e-56 221.9 313 39.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 7.7e-56 221.9 265 46.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 7.7e-56 221.9 304 41.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 7.7e-56 221.9 267 43.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.3e-55 221.1 310 42.6
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.7e-55 220.7 303 40.6
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.7e-55 220.7 310 42.9
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.2e-55 220.3 277 43.3
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.2e-55 220.3 295 41.7
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.9e-55 219.9 272 43.0
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.9e-55 219.9 307 39.1
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 5.0e-55 219.2 323 40.9
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 6.5e-55 218.8 292 40.8
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 8.5e-55 218.4 301 40.2
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 8.5e-55 218.4 336 39.6
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.1e-54 218.0 336 40.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.1e-54 218.0 332 39.5
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.9e-54 217.2 261 43.7
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.5e-54 216.9 312 39.7
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 3.2e-54 216.5 269 43.9
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.5e-54 215.7 322 39.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 7.2e-54 215.3 249 44.6
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 9.4e-54 214.9 246 44.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.2e-53 214.5 320 40.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.6e-53 213.0 250 43.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.7e-53 212.6 207 50.7
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 7.9e-53 211.8 318 39.6
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.0e-52 211.5 314 40.4
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.3e-52 210.3 268 42.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 2.3e-52 210.3 329 38.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 6.7e-52 208.8 270 43.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 8.8e-52 208.4 249 42.6
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 8.8e-52 208.4 279 40.9
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.1e-51 208.0 334 39.8
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.1e-51 208.0 334 39.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.1e-51 208.0 343 37.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.5e-51 207.6 331 39.3
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 2.0e-51 207.2 304 40.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 2.0e-51 207.2 304 40.1
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.0e-51 207.2 264 43.9
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.6e-51 206.8 315 40.0
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.3e-51 206.5 200 50.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 4.4e-51 206.1 276 42.8
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 4.4e-51 206.1 277 41.9
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.4e-51 206.1 322 39.1
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 5.7e-51 205.7 231 46.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 5.7e-51 205.7 271 42.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 7.4e-51 205.3 269 43.5
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 7.4e-51 205.3 305 42.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 9.7e-51 204.9 292 40.4
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 9.7e-51 204.9 271 42.4
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.3e-50 204.5 271 42.1
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.7e-50 204.1 310 40.0
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.8e-50 203.4 272 42.6
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.8e-50 203.4 241 44.8
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 2.8e-50 203.4 269 42.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.8e-50 203.4 234 44.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.8e-50 203.4 305 39.3
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.3e-50 202.2 311 38.3
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 6.3e-50 202.2 291 39.5
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.8e-49 200.7 315 39.0
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.4e-49 200.3 315 39.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 3.1e-49 199.9 272 40.8
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.1e-49 199.9 304 39.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.1e-49 199.5 304 39.1
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.1e-49 199.5 205 47.8
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 5.3e-49 199.1 272 40.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-48 198.0 306 39.9
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-48 198.0 306 39.9
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.5e-48 197.6 320 37.5
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 7.2e-46 188.7 357 33.1
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 7.2e-46 188.7 211 47.9
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 3.6e-45 186.4 339 35.7
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.4e-44 184.5 211 46.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.8e-44 184.1 210 48.6
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.1e-43 181.4 226 42.9
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.3e-43 179.9 259 39.8
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.8e-42 176.0 364 32.4
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 9.1e-41 171.8 318 37.7
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-37 160.6 316 33.5
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.0e-35 154.1 259 37.5
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 2.2e-34 150.6 317 32.8
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 3.2e-30 136.7 245 32.2
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.5e-30 136.0 221 38.0
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.1e-29 134.0 198 38.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.0e-28 131.7 220 36.8
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.0e-28 131.7 218 36.2
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.0e-28 131.7 220 36.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 4.4e-27 126.3 384 27.1
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.8e-26 123.6 245 32.2
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.1e-25 121.7 130 43.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-22 111.7 199 33.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.8e-20 104.4 191 34.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.0e-19 100.9 204 34.3
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 6.3e-18 95.9 241 28.6
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-17 95.1 106 41.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 2.4e-17 94.0 143 38.5
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.4e-17 94.0 110 41.8
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.1e-17 93.2 97 45.4
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 5.4e-17 92.8 192 32.8
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.2e-16 91.7 142 37.3
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-15 88.6 189 30.7
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.0e-15 88.6 201 32.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-13 81.3 233 27.9
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.0e-08 62.8 80 38.8
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.0e-07 59.7 52 46.2
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 7.3e-06 55.8 45 55.6


User provided reference genes

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