Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.1e-237 826.6 524 100.0
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 3.8e-46 190.3 359 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.5e-42 178.3 305 42.3
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 3.1e-32 144.1 271 35.1
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.2e-31 142.1 257 35.0
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.6e-31 141.7 251 35.5
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.6e-31 141.7 211 39.8
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.9e-30 137.5 165 42.4
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 5.0e-30 136.7 180 38.9
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 5.0e-30 136.7 185 39.5
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 5.0e-30 136.7 203 39.9
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.9e-29 134.8 183 38.8
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.9e-29 134.8 205 38.5
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 1.9e-29 134.8 196 39.3
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 4.2e-29 133.7 208 38.0
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 5.5e-29 133.3 402 33.6
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 7.2e-29 132.9 210 37.6
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 7.2e-29 132.9 175 40.6
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 7.2e-29 132.9 175 40.6
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 7.2e-29 132.9 163 44.8
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 9.5e-29 132.5 176 40.3
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.2e-28 132.1 161 40.4
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.8e-28 131.0 198 36.4
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.8e-28 131.0 322 32.0
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.8e-28 131.0 165 41.2
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 2.8e-28 131.0 190 39.5
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 3.6e-28 130.6 192 38.0
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.0e-27 129.0 259 32.0
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.0e-27 129.0 255 34.9
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-27 128.6 217 38.2
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.4e-27 128.6 213 36.6
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 1.8e-27 128.3 258 33.7
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.8e-27 128.3 192 38.5
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 2.3e-27 127.9 163 41.7
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 2.3e-27 127.9 203 39.9
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 3.0e-27 127.5 211 35.5
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 4.0e-27 127.1 188 37.8
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 4.0e-27 127.1 196 36.2
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 5.2e-27 126.7 235 32.3
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 5.2e-27 126.7 222 35.6
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 6.8e-27 126.3 190 38.4
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 8.9e-27 125.9 323 30.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 8.9e-27 125.9 232 36.6
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.5e-26 125.2 156 41.0
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.5e-26 125.2 341 30.5
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.5e-26 125.2 363 31.7
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 2.0e-26 124.8 258 32.9
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 2.0e-26 124.8 184 38.0
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.6e-26 124.4 188 36.7
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 2.6e-26 124.4 158 43.0
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 2.6e-26 124.4 183 37.7
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 3.4e-26 124.0 221 38.9
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 3.4e-26 124.0 157 41.4
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 3.4e-26 124.0 206 36.4
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 4.4e-26 123.6 223 34.5
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 4.4e-26 123.6 332 28.9
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 5.7e-26 123.2 182 37.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 7.5e-26 122.9 157 41.4
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 7.5e-26 122.9 371 29.6
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 7.5e-26 122.9 251 32.3
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 7.5e-26 122.9 211 34.6
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 7.5e-26 122.9 241 34.0
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 9.8e-26 122.5 162 38.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 9.8e-26 122.5 319 31.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 9.8e-26 122.5 160 38.8
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.7e-25 121.7 317 29.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.7e-25 121.7 191 41.9
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.7e-25 121.7 260 31.2
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 2.2e-25 121.3 260 30.8
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 2.8e-25 120.9 287 29.6
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 6.3e-25 119.8 205 36.1
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 6.3e-25 119.8 282 33.0
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 6.3e-25 119.8 191 38.2
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 6.3e-25 119.8 161 40.4
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.1e-24 119.0 160 40.6
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 1.1e-24 119.0 224 30.8
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.4e-24 118.6 160 40.0
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.4e-24 118.6 208 34.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.8e-24 118.2 198 37.9
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 2.4e-24 117.9 155 41.3
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 2.4e-24 117.9 155 41.3
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 4.1e-24 117.1 158 38.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 9.2e-24 115.9 323 29.4
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 9.2e-24 115.9 446 30.0
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.2e-23 115.5 161 40.4
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.2e-23 115.5 158 39.2
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 1.2e-23 115.5 175 38.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.6e-23 115.2 470 27.4
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.6e-23 115.2 220 32.3
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.0e-23 114.8 147 41.5
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 2.7e-23 114.4 314 29.0
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.7e-22 111.7 187 38.0
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 2.3e-22 111.3 442 26.5
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.9e-22 110.9 449 26.7
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.9e-22 110.9 190 36.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.8e-22 110.5 331 29.0
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 6.6e-22 109.8 203 35.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 4.3e-21 107.1 186 36.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 1.2e-20 105.5 311 28.6
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 4.7e-20 103.6 318 30.5
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.8e-19 101.7 443 25.1
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 2.3e-19 101.3 142 37.3
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 4.0e-19 100.5 139 41.0
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 5.2e-19 100.1 183 33.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 9.2e-16 89.4 91 44.0
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.7e-15 87.8 123 41.5
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.0e-14 85.9 205 31.7
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 5.8e-10 70.1 81 39.5
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 4.9e-09 67.0 245 24.9
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 4.9e-09 67.0 245 24.9


User provided reference genes

Program Settings