Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.7e-94 348.6 167 100.0
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.8e-80 301.6 217 71.4
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-78 295.8 217 70.5
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-75 285.4 217 68.7
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-73 277.7 180 77.2
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-67 260.0 184 71.7
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-67 258.8 202 67.8
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.6e-67 258.5 177 74.6
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 4.5e-57 224.9 176 66.5
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.4e-56 220.7 217 56.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-54 216.5 159 69.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.4e-48 194.1 188 56.4
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-45 186.8 180 57.2
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 6.7e-45 184.5 138 65.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-37 158.7 114 70.2
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 3.3e-36 155.6 93 83.9
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 3.6e-30 135.6 107 62.6
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.9e-23 113.2 127 44.9
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 8.0e-22 107.8 194 33.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.3e-21 106.3 197 31.5
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 3.0e-21 105.9 205 32.7
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 3.9e-21 105.5 187 33.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.9e-21 105.5 198 34.3
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-21 105.5 204 32.4
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 3.9e-21 105.5 137 38.7
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 5.2e-21 105.1 198 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 6.7e-21 104.8 204 31.9
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 8.8e-21 104.4 198 32.8
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 8.8e-21 104.4 198 32.8
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-20 104.0 207 33.3
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-20 104.0 207 33.3
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.5e-20 103.6 197 33.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.5e-20 103.6 220 30.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.0e-20 103.2 197 33.0
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 2.6e-20 102.8 222 31.5
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.6e-20 102.8 197 32.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 3.3e-20 102.4 188 34.0
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.4e-20 102.1 207 30.9
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 4.4e-20 102.1 220 31.4
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 4.4e-20 102.1 220 31.4
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 5.7e-20 101.7 197 33.5
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 5.7e-20 101.7 197 33.5
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 5.7e-20 101.7 197 33.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 5.7e-20 101.7 219 28.8
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 5.7e-20 101.7 198 32.8
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 5.7e-20 101.7 197 31.0
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 5.7e-20 101.7 221 30.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 5.7e-20 101.7 199 32.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 7.4e-20 101.3 222 32.4
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 7.4e-20 101.3 100 46.0
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 7.4e-20 101.3 203 30.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 7.4e-20 101.3 220 32.3
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 9.7e-20 100.9 199 30.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 9.7e-20 100.9 197 31.5
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.3e-19 100.5 199 33.2
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.3e-19 100.5 187 33.7
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 1.3e-19 100.5 197 31.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 1.3e-19 100.5 207 30.4
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.7e-19 100.1 187 32.6
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.7e-19 100.1 185 33.5
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.7e-19 100.1 198 32.3
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.7e-19 100.1 207 29.5
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.7e-19 100.1 189 33.3
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 2.2e-19 99.8 187 32.6
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.2e-19 99.8 222 31.1
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.2e-19 99.8 198 31.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 2.8e-19 99.4 197 31.5
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.8e-19 99.4 191 33.5
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 2.8e-19 99.4 198 32.3
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 3.7e-19 99.0 191 33.5
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.7e-19 99.0 198 32.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 3.7e-19 99.0 187 32.6
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.8e-19 98.6 222 31.1
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 4.8e-19 98.6 187 32.6
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 4.8e-19 98.6 197 31.5
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 6.3e-19 98.2 189 32.8
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 6.3e-19 98.2 187 33.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 6.3e-19 98.2 190 33.7
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 8.2e-19 97.8 222 31.1
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 8.2e-19 97.8 222 31.1
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 8.2e-19 97.8 222 31.1
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 8.2e-19 97.8 189 32.8
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 8.2e-19 97.8 190 33.2
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-18 97.4 222 31.1
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.1e-18 97.4 204 31.4
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.4e-18 97.1 187 33.2
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.4e-18 97.1 190 31.6
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 1.4e-18 97.1 187 32.6
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.4e-18 97.1 117 40.2
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.4e-18 97.1 117 40.2
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.4e-18 97.1 187 32.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.4e-18 97.1 187 32.6
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.4e-18 97.1 198 32.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.8e-18 96.7 189 31.7
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.8e-18 96.7 104 46.2
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 1.8e-18 96.7 220 30.0
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.4e-18 96.3 220 30.0
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.4e-18 96.3 111 43.2
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.4e-18 96.3 133 39.1
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 2.4e-18 96.3 127 40.9
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.4e-18 96.3 187 32.6
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.4e-18 96.3 110 43.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 3.1e-18 95.9 100 47.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 3.1e-18 95.9 111 43.2
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 4.1e-18 95.5 187 32.1
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 4.1e-18 95.5 101 45.5
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.1e-18 94.4 111 43.2
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.6e-17 92.8 119 40.3
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.6e-17 92.8 198 28.3
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.5e-17 92.4 111 42.3
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 3.5e-17 92.4 187 31.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 3.5e-17 92.4 102 46.1
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.5e-17 92.4 119 40.3
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 4.5e-17 92.0 108 43.5
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 4.5e-17 92.0 112 42.0
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 5.9e-17 91.7 133 39.1
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 7.7e-17 91.3 115 44.3
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 7.7e-17 91.3 187 29.9
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.0e-16 90.9 189 31.7
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.3e-16 90.5 100 44.0
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.3e-16 90.5 187 31.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.3e-16 90.5 110 40.0
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 3.8e-16 89.0 103 44.7
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 6.5e-16 88.2 138 39.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.5e-16 87.8 103 41.7
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 2.5e-15 86.3 200 31.0
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 2.5e-15 86.3 115 38.3
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 2.5e-15 86.3 116 38.8
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 3.2e-15 85.9 101 42.6
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 3.2e-15 85.9 98 42.9
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.4e-15 84.3 198 30.3
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-14 84.0 203 28.6
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-14 83.6 100 40.0
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 4.7e-14 82.0 184 30.4
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 3.0e-13 79.3 185 30.3
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.0e-13 79.3 145 33.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 8.8e-13 77.8 160 32.5
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 2.0e-12 76.6 133 34.6
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.7e-12 74.3 91 40.7
Pp3c11_8200 Physcomitrium patens HOM05D004663 ORTHO05D308975 4.8e-11 72.0 33 97.0
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.4e-10 70.5 91 39.6
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 1.6e-09 67.0 39 76.9
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 4.5e-09 65.5 63 52.4
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.0e-08 64.3 93 36.6
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 6.1e-06 55.1 26 88.5


User provided reference genes

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