Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.5e-220 768.5 388 100.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 2.1e-94 350.1 273 64.5
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 2.5e-74 283.5 278 55.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.3e-72 276.9 287 52.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-71 274.6 329 47.7
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 3.3e-71 273.1 294 49.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 5.7e-71 272.3 252 55.2
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 9.7e-71 271.6 244 56.6
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 2.2e-70 270.4 219 60.3
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 3.7e-70 269.6 282 49.6
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 6.3e-70 268.9 284 51.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 8.2e-70 268.5 299 51.2
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 8.2e-70 268.5 263 52.9
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.1e-69 268.1 284 49.3
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.1e-69 268.1 277 50.9
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.4e-69 267.7 286 51.0
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.1e-69 266.5 283 50.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 4.1e-69 266.2 285 50.9
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.1e-69 266.2 286 50.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 4.1e-69 266.2 279 51.3
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 5.3e-69 265.8 250 54.0
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 5.3e-69 265.8 339 45.1
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.2e-68 264.6 225 57.8
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.2e-68 264.6 222 57.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.2e-68 264.6 245 55.1
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.6e-68 263.5 252 53.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.4e-68 263.1 225 57.3
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.4e-68 263.1 279 51.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.4e-68 263.1 281 50.9
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 4.5e-68 262.7 281 50.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 4.5e-68 262.7 288 49.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 5.9e-68 262.3 253 52.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.7e-68 261.9 287 48.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 7.7e-68 261.9 301 49.5
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 7.7e-68 261.9 251 53.4
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.0e-67 261.5 248 52.4
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.0e-67 261.5 285 50.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.3e-67 261.2 277 50.9
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.3e-67 261.2 280 50.4
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.3e-67 261.2 285 49.5
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.3e-67 261.2 264 51.5
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.7e-67 260.8 288 48.6
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.2e-67 260.4 253 53.0
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.2e-67 260.4 286 49.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.2e-67 260.4 285 49.5
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 2.9e-67 260.0 318 46.9
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 2.9e-67 260.0 318 46.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.9e-67 260.0 256 52.7
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.8e-67 259.6 256 52.7
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 5.0e-67 259.2 225 56.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 5.0e-67 259.2 308 45.1
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 5.0e-67 259.2 225 56.4
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.5e-67 258.8 275 48.4
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 8.5e-67 258.5 295 48.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.1e-66 258.1 280 48.9
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.1e-66 258.1 220 57.3
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-66 257.3 285 49.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.9e-66 257.3 285 49.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.9e-66 257.3 319 46.7
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.9e-66 257.3 281 48.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.9e-66 257.3 266 50.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.2e-66 256.5 287 49.1
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 4.2e-66 256.1 251 51.8
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.2e-66 256.1 278 48.9
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.2e-66 256.1 225 55.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 5.5e-66 255.8 241 53.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 7.2e-66 255.4 292 49.0
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.2e-65 254.6 326 45.7
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.6e-65 254.2 225 54.2
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.6e-65 254.2 280 48.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.1e-65 253.8 244 52.0
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.7e-65 253.4 315 47.3
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.7e-65 253.4 247 53.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.8e-64 250.8 255 51.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.8e-64 250.8 320 46.6
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.3e-64 250.4 274 51.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.9e-64 249.6 269 50.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.7e-64 248.8 323 45.5
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 6.7e-64 248.8 220 55.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.1e-63 248.1 297 47.1
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.1e-63 248.1 309 46.6
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.5e-63 247.7 259 51.4
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 3.3e-63 246.5 294 46.9
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 4.8e-62 242.7 328 44.8
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.8e-61 240.7 278 47.1
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.1e-61 240.0 226 51.8
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.1e-61 239.6 237 50.6
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.2e-60 238.0 226 51.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.6e-60 236.9 205 57.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.2e-59 233.8 205 55.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.8e-59 233.0 248 52.4
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 8.8e-56 221.9 278 47.1
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 9.7e-55 218.4 222 50.9
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 7.7e-52 208.8 339 38.9
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.1e-50 204.9 215 52.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.5e-50 204.5 338 39.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 7.2e-50 202.2 213 52.6
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.8e-48 197.6 213 52.1
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-44 184.9 171 53.8
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.6e-44 183.7 167 52.1
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.9e-44 182.6 313 38.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.0e-43 179.5 312 37.2
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.5e-42 177.2 220 47.7
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.1e-41 174.1 385 31.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.4e-37 161.4 220 41.8
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.0e-35 155.2 144 53.5
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 2.2e-35 154.1 117 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 3.6e-33 146.7 126 61.9
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.8e-32 144.4 143 51.0
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.0e-32 143.7 244 40.6
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.0e-31 141.0 222 40.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-31 140.6 210 41.9
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.6e-25 120.2 158 44.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 6.1e-25 119.4 139 48.9
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.5e-20 103.6 64 71.9
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.9e-18 97.8 94 51.1
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-17 95.1 97 50.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.5e-15 85.9 109 43.1
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.0e-07 61.2 106 34.9


User provided reference genes

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