Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1489.6 752 100.0
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 752 88.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 752 86.7
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1176.4 754 78.4
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1132.9 739 75.6
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1131.7 739 75.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1131.3 741 75.4
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1129.0 746 75.7
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1128.6 747 75.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1126.7 746 75.3
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1125.9 746 75.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1125.5 744 74.5
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1125.2 744 74.9
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1124.8 744 74.7
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1124.8 746 75.5
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1124.0 744 74.5
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1123.6 742 74.9
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1123.6 745 75.6
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1122.8 742 74.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1122.8 744 74.6
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1121.7 739 75.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1121.3 746 75.1
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1121.3 746 74.5
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1120.1 745 75.3
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1119.0 742 74.4
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1117.8 744 74.3
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1117.8 746 74.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1117.4 744 74.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1117.1 745 74.5
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1117.1 744 74.2
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1116.7 747 74.6
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1116.3 744 74.3
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1116.3 739 74.7
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1115.9 742 74.3
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1115.5 687 79.9
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1115.1 746 73.6
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1114.8 744 74.1
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1114.4 744 74.2
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1114.0 744 74.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1114.0 746 74.5
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1114.0 746 73.7
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1113.6 744 74.3
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1112.1 744 75.3
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1111.7 740 73.6
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1111.3 741 74.1
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1111.3 746 73.6
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1110.9 746 73.3
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1110.9 744 74.2
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1110.5 746 74.1
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1110.5 746 73.7
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1110.1 745 74.0
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1110.1 742 73.7
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1109.4 740 74.1
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1109.4 740 73.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1109.4 746 74.3
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1108.2 746 73.9
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1107.8 750 73.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1107.4 739 74.8
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1107.0 740 73.6
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1107.0 746 74.3
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1107.0 747 73.8
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1106.7 744 73.1
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1106.7 748 73.5
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1106.3 743 73.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1106.3 746 74.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1106.3 711 76.2
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1105.9 740 73.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1105.5 740 73.4
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1105.5 773 71.8
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1105.5 740 73.8
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1105.5 741 74.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1105.1 747 73.6
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1105.1 741 73.8
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1105.1 744 73.7
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1104.4 748 73.3
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1104.0 746 73.9
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1103.2 690 77.4
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1103.2 741 73.8
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1102.8 712 75.8
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1102.4 712 75.4
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1102.0 740 73.4
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1101.7 711 76.1
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1101.3 748 73.8
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1101.3 742 73.6
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1100.9 739 73.3
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1100.5 746 72.9
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1100.1 747 73.1
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1099.7 745 74.0
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1099.0 708 75.3
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1098.6 744 73.7
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1097.8 744 73.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1097.8 744 73.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1097.4 740 72.8
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1097.4 746 73.7
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1097.0 743 73.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1096.6 747 72.8
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1096.6 767 72.0
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1096.6 767 72.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1096.3 744 73.4
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1096.3 745 73.7
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1095.1 746 73.1
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1094.7 739 73.6
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1094.7 745 73.6
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1092.8 708 75.0
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1092.8 748 72.7
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1092.8 716 74.6
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1092.4 748 72.7
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1090.9 707 76.1
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1087.8 699 77.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1086.2 748 73.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1084.7 711 75.9
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1081.2 711 75.9
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1080.5 776 69.8
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1079.3 709 74.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1075.1 775 69.9
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.6e-311 1070.8 724 72.5
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 3.9e-310 1067.8 713 74.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 5.6e-309 1063.9 825 67.2
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 3.6e-308 1061.2 668 78.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 1.7e-305 1052.4 690 74.5
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 3.9e-302 1041.2 744 71.0
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 7.6e-298 1026.9 739 71.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 8.4e-297 1023.5 642 79.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 7.4e-293 1010.4 751 69.1
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 1.8e-291 1005.7 632 77.2
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 6.9e-291 1003.8 675 73.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 4.5e-290 1001.1 613 79.6
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.1e-240 837.0 667 62.5
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.2e-234 817.0 685 60.1
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 7.3e-224 781.2 646 61.9
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.3e-192 676.0 538 66.2
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 9.0e-174 614.8 453 68.7
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.1e-170 603.6 739 48.2
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.5e-170 602.8 522 61.3
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.0e-169 601.3 739 48.2
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 2.3e-169 600.1 463 67.6
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 3.7e-119 433.3 261 80.8
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 5.8e-112 409.5 432 52.8
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.1e-86 325.5 578 38.1
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.5e-72 278.5 224 65.2
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 6.4e-71 273.1 151 84.8
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 3.1e-65 254.2 143 85.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.1e-53 214.9 170 67.1
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 8.5e-39 166.4 273 38.5
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.3e-34 152.5 88 81.8
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.7e-31 142.1 79 84.8
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.4e-27 127.5 98 64.3
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.0e-23 116.3 72 73.6
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 5.0e-23 114.0 71 71.8
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.7e-19 100.5 80 61.2
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 9.8e-19 99.8 69 68.1
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 1.4e-17 95.9 108 50.0
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.2e-16 92.8 73 63.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.7e-16 91.7 57 73.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.7e-15 89.0 58 69.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.5e-15 87.0 222 31.5
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 2.1e-13 82.0 47 83.0
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.0e-11 75.5 64 59.4
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 2.6e-11 75.1 90 42.2
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.4e-11 74.3 50 70.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.1e-09 68.2 43 65.1
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.5e-08 64.7 48 64.6
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 7.7e-08 63.5 85 37.6


User provided reference genes

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