Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 0.0e+00 1167.9 570 100.0
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 6.8e-307 1056.6 553 91.3
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 5.2e-299 1030.4 561 88.4
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-298 1029.2 554 89.0
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-298 1029.2 554 89.0
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 4.4e-298 1027.3 564 87.8
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 7.5e-298 1026.5 553 89.5
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 2.2e-297 1025.0 561 87.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.7e-297 1024.2 555 88.5
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.7e-297 1024.2 562 87.4
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 4.9e-297 1023.8 554 88.4
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 6.4e-297 1023.5 555 88.6
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 6.4e-297 1023.5 557 88.5
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 8.3e-297 1023.1 561 88.1
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 562 87.9
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 562 87.9
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 561 88.2
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.9e-296 1021.9 561 87.9
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.9e-296 1021.9 553 88.8
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.9e-296 1021.9 561 87.9
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-296 1021.5 562 87.5
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-296 1021.5 562 87.5
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.2e-296 1021.1 562 87.4
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 4.1e-296 1020.8 562 87.9
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 4.1e-296 1020.8 562 87.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 5.4e-296 1020.4 563 87.2
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 7.1e-296 1020.0 562 87.4
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 7.1e-296 1020.0 562 87.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 7.1e-296 1020.0 562 87.2
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 556 87.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 562 87.2
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 554 88.4
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 562 87.2
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 561 87.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 553 87.9
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 560 87.7
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 562 87.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.1e-295 1018.5 562 87.2
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 2.7e-295 1018.1 562 87.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.7e-295 1018.1 557 87.8
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 557 87.6
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 562 87.2
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 562 87.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 4.6e-295 1017.3 552 88.8
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 6.0e-295 1016.9 562 86.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 6.0e-295 1016.9 562 87.2
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.0e-294 1016.1 562 86.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.3e-294 1015.8 564 86.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.3e-294 1015.8 556 87.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.7e-294 1015.4 562 86.8
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.7e-294 1015.4 555 87.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 557 87.4
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.0e-294 1014.6 555 87.7
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 3.0e-294 1014.6 555 87.6
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.0e-294 1014.6 555 87.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.6e-294 1013.4 568 85.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 6.6e-294 1013.4 555 87.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 8.6e-294 1013.1 560 87.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 8.6e-294 1013.1 562 86.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 8.6e-294 1013.1 566 86.2
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.1e-293 1012.7 559 86.2
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.5e-293 1012.3 555 87.4
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.5e-293 1011.5 564 86.3
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.5e-293 1011.5 553 87.0
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.3e-293 1011.1 559 87.1
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 4.3e-293 1010.7 555 86.7
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 4.3e-293 1010.7 555 86.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.3e-293 1010.7 555 87.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.3e-293 1010.7 555 87.4
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 5.6e-293 1010.4 562 86.1
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 5.6e-293 1010.4 555 86.8
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 7.3e-293 1010.0 582 84.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 7.3e-293 1010.0 555 86.8
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.3e-293 1010.0 564 86.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 9.5e-293 1009.6 555 86.7
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 553 87.0
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 562 86.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.6e-292 1008.8 553 87.0
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.6e-292 1008.8 563 86.3
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 555 86.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 555 86.5
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.6e-292 1007.7 553 86.6
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.4e-291 1005.7 564 85.1
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.8e-291 1005.4 555 86.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.8e-291 1005.4 553 86.6
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.3e-291 1005.0 562 85.4
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.2e-291 1003.8 593 83.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.3e-289 999.2 592 82.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.3e-286 989.2 562 84.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.3e-285 984.6 521 89.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 3.3e-285 984.6 592 81.4
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.6e-284 981.1 617 78.9
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.1e-283 979.5 567 84.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 7.6e-274 946.8 521 86.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 9.3e-272 939.9 556 82.7
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.1e-267 926.4 487 89.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 5.4e-264 914.1 541 80.6
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 5.1e-262 907.5 491 88.6
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.9e-254 881.3 454 91.2
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.1e-251 871.7 547 77.7
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.9e-248 862.4 555 77.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 7.9e-239 830.5 565 76.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.1e-227 790.4 503 76.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 6.5e-225 784.3 562 70.6
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 8.0e-223 777.3 406 89.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-221 772.7 565 70.8
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.5e-218 761.9 521 74.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 4.5e-218 761.5 534 72.5
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.2e-217 759.2 418 87.6
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 8.5e-217 757.3 521 73.7
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.2e-209 732.6 562 67.1
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.1e-207 726.1 564 66.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.3e-204 714.1 555 67.7
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.4e-197 692.2 389 85.3
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.8e-189 664.1 512 68.2
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.7e-180 635.6 329 90.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.8e-167 592.8 316 89.9
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.5e-152 543.9 504 59.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.8e-140 502.7 262 89.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-139 500.7 462 59.3
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.5e-136 490.0 549 51.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.7e-125 451.8 499 51.7
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.4e-123 444.9 514 50.8
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.4e-121 441.0 291 74.6
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.1e-121 439.1 293 75.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.8e-119 433.3 255 84.3
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-118 431.0 385 59.5
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.3e-116 424.5 325 68.0
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 8.8e-113 411.8 555 45.8
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.6e-106 389.8 350 58.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.0e-105 386.3 234 83.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.7e-105 385.6 196 91.8
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-93 347.8 245 71.8
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.7e-93 345.5 214 79.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.8e-92 343.2 268 64.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.0e-92 342.8 179 88.3
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-85 321.2 167 88.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.6e-84 315.8 160 92.5
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-81 307.0 296 58.8
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.7e-79 300.1 156 90.4
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.4e-78 298.1 154 86.4
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-75 287.3 317 53.6
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.0e-69 266.2 158 84.2
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.5e-61 240.4 148 79.7
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 3.9e-60 236.9 157 77.1
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.9e-51 208.0 138 73.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-50 205.3 122 82.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 7.6e-48 196.1 275 45.8
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 7.8e-45 186.0 105 83.8
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-41 175.6 113 77.9
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.9e-41 172.9 153 57.5
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 7.6e-32 142.9 96 74.0
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 9.6e-27 125.9 75 82.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 6.9e-25 119.8 73 82.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 3.2e-22 110.9 143 49.0
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-21 107.8 55 92.7
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-18 98.2 58 81.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 9.0e-17 92.8 82 61.0
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.0e-17 92.8 63 73.0
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.5e-15 86.3 54 77.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-14 85.9 75 60.0
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-14 85.9 43 86.0
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.5e-14 84.7 88 60.2
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.3e-12 78.2 49 75.5
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-11 75.9 59 62.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 5.5e-06 57.0 56 58.9
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.5e-06 57.0 56 58.9
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 9.4e-06 56.2 31 80.6


User provided reference genes

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