Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 0.0e+00 1189.9 590 100.0
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.1e-170 601.3 486 64.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-87 326.2 588 38.6
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-78 297.4 489 39.7
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.7e-55 221.5 474 33.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.6e-53 214.9 386 35.8
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.0e-44 183.7 419 32.9
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.3e-44 183.3 362 37.6
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 3.5e-40 170.6 397 31.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.3e-39 168.7 383 30.8
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.1e-38 165.6 384 30.5
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.5e-38 165.2 434 28.8
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.3e-38 163.7 388 30.7
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.1e-36 157.5 430 30.9
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.1e-36 157.5 453 29.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.0e-35 154.8 394 30.2
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 3.4e-35 154.1 429 28.4
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.5e-35 153.7 391 30.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 9.9e-35 152.5 393 29.8
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.9e-34 151.0 389 29.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.9e-34 151.0 434 30.4
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.8e-34 150.6 384 28.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.4e-33 148.7 394 28.2
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.4e-33 148.7 381 29.1
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.9e-33 148.3 422 30.3
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.9e-33 148.3 385 30.9
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 2.4e-33 147.9 394 29.4
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 3.2e-33 147.5 396 28.8
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.2e-33 147.5 384 29.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 5.5e-33 146.7 392 30.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-33 146.7 392 30.4
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.3e-33 146.0 419 27.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 9.3e-33 146.0 387 30.2
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 2.1e-32 144.8 389 28.5
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 2.1e-32 144.8 395 29.6
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 2.7e-32 144.4 392 30.1
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.7e-32 144.4 468 28.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.6e-32 143.7 386 29.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 6.0e-32 143.3 407 28.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.9e-32 142.9 398 28.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.9e-32 142.9 500 29.0
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.0e-31 142.5 442 29.2
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.0e-31 142.5 386 27.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.0e-31 142.5 389 27.8
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-31 142.1 419 27.4
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.3e-31 142.1 501 27.3
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.8e-31 141.7 517 27.1
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.8e-31 141.7 400 29.8
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 3.9e-31 140.6 397 29.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 3.9e-31 140.6 400 26.5
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 5.1e-31 140.2 594 25.6
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.7e-31 139.8 475 27.8
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 8.7e-31 139.4 392 29.8
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.5e-30 138.7 392 29.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.5e-30 138.7 392 28.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.5e-30 138.7 398 27.9
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 1.9e-30 138.3 387 28.9
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.5e-30 137.9 391 29.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.3e-30 137.5 418 27.3
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.3e-30 137.5 389 27.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.3e-30 137.1 387 28.4
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.6e-30 136.7 404 28.5
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 5.6e-30 136.7 424 28.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.6e-30 136.7 404 29.2
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 7.4e-30 136.3 417 29.0
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.1e-29 134.8 432 27.3
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.7e-29 134.0 438 28.3
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 6.2e-29 133.3 384 28.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.2e-29 133.3 442 27.1
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.2e-29 133.3 442 27.1
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.2e-29 133.3 388 27.1
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 8.2e-29 132.9 422 27.0
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.2e-29 132.9 388 28.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.1e-28 132.5 385 27.0
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-28 132.5 367 28.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-28 132.1 397 28.7
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-28 132.1 400 27.5
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.8e-28 131.7 390 29.2
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.4e-28 131.3 438 26.9
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.4e-28 131.3 459 26.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.4e-28 131.3 392 28.3
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.4e-28 131.3 389 27.8
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.1e-28 131.0 398 26.6
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.1e-28 131.0 411 29.9
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 4.0e-28 130.6 426 27.2
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 5.3e-28 130.2 480 26.2
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.3e-28 130.2 389 27.2
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 6.9e-28 129.8 452 25.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 9.0e-28 129.4 387 25.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 9.0e-28 129.4 404 26.7
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.2e-27 129.0 414 28.3
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 3.4e-27 127.5 469 26.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.8e-27 126.7 422 27.7
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.8e-27 126.7 422 27.7
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.3e-26 125.6 314 27.7
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.9e-26 124.4 383 26.6
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 3.8e-26 124.0 302 29.8
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 8.4e-26 122.9 391 27.9
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-25 121.3 438 25.8
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 4.2e-25 120.6 391 27.6
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 5.5e-25 120.2 365 25.8
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 9.3e-25 119.4 385 27.0
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.1e-24 118.2 485 25.4
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 3.5e-24 117.5 364 26.1
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 4.6e-24 117.1 442 26.5
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.0e-24 116.7 376 27.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 7.9e-24 116.3 194 38.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-23 115.5 380 28.9
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.3e-23 114.8 108 49.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.9e-23 114.0 418 28.0
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.1e-22 112.5 419 28.2
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.9e-22 111.7 375 28.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 4.3e-22 110.5 455 28.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 9.7e-22 109.4 120 45.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.8e-21 107.8 399 25.8
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 6.3e-21 106.7 415 26.7
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.1e-20 105.9 107 46.7
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.1e-20 105.9 110 47.3
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.8e-20 105.1 116 45.7
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 4.1e-20 104.0 107 48.6
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 6.9e-20 103.2 186 37.1
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.9e-19 100.1 277 27.4
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 5.9e-19 100.1 129 45.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.7e-19 99.8 432 26.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.3e-18 99.0 109 43.1
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.9e-18 97.8 104 47.1
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.3e-14 84.3 106 38.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 7.4e-14 83.2 108 47.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 9.7e-14 82.8 101 42.6
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 8.2e-13 79.7 304 27.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.1e-12 79.3 115 40.0
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.4e-12 79.0 105 39.0
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.4e-12 78.2 118 34.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.3e-12 77.0 391 25.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 9.1e-12 76.3 444 21.4
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.6e-11 74.7 105 37.1
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.0e-10 72.8 108 39.8
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 8.5e-10 69.7 169 28.4
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.0e-07 62.8 103 35.9
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 3.0e-07 61.2 116 35.3
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-07 60.5 159 32.1
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 2.0e-06 58.5 194 26.8
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 5.7e-06 57.0 160 28.8


User provided reference genes

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