Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_19470 Physcomitrium patens HOM05D012629 ORTHO05D317660 2.2e-157 558.9 277 100.0
Pp3c16_6040 Physcomitrium patens HOM05D012629 ORTHO05D311537 3.6e-144 515.0 291 89.3
Pp3c25_2980 Physcomitrium patens HOM05D012629 ORTHO05D314698 4.1e-140 501.5 291 87.6
Pp3c10_11580 Physcomitrium patens HOM05D012629 ORTHO05D315663 2.6e-134 482.3 291 85.2
Pp3c1_300 Physcomitrium patens HOM05D012629 ORTHO05D308459 6.3e-133 477.6 285 84.6
Pp3c14_3960 Physcomitrium patens HOM05D012629 ORTHO05D318024 4.0e-119 431.8 291 76.3
Pp3c16_2390 Physcomitrium patens HOM05D012629 ORTHO05D316497 7.5e-118 427.6 291 76.6
Pp3c1_10611 Physcomitrium patens HOM05D012629 ORTHO05D312212 1.6e-99 366.7 247 77.3
Pp3c13_14688 Physcomitrium patens HOM05D012629 ORTHO05D312804 2.8e-96 355.9 291 66.3
Pp3c10_25290 Physcomitrium patens HOM05D012629 ORTHO05D311067 4.8e-80 302.0 187 80.7
Pp3c15_13740 Physcomitrium patens HOM05D012629 ORTHO05D318314 4.8e-48 195.7 111 86.5
Pp3c13_19021 Physcomitrium patens HOM05D012629 ORTHO05D311780 3.6e-35 152.9 83 86.7
Pp3c13_14640 Physcomitrium patens HOM05D012629 ORTHO05D314017 1.5e-33 147.5 107 72.0
Pp3c15_13710 Physcomitrium patens HOM05D013596 ORTHO05D315285 1.7e-13 80.9 133 43.6
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 2.8e-11 73.6 233 27.9
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.6e-11 73.2 207 29.0
Thecc.06G159700 Theobroma cacao HOM05D002606 ORTHO05D003016 3.6e-11 73.2 180 30.0
MD10G1269500 Malus domestica HOM05D002606 ORTHO05D003016 4.7e-11 72.8 182 29.1
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 4.7e-11 72.8 242 28.1
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 6.1e-11 72.4 202 28.2
Haze_27230 Corylus avellana HOM05D003868 ORTHO05D005364 8.0e-11 72.0 203 27.6
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 8.0e-11 72.0 215 28.4
Duzib235G0230 Durio zibethinus HOM05D002606 ORTHO05D003016 1.0e-10 71.6 180 30.0
THA.LOC104812654 Tarenaya hassleriana HOM05D002606 ORTHO05D003016 1.0e-10 71.6 200 28.5
CANSAT35G1314 Cannabis sativa HOM05D002606 ORTHO05D003016 1.4e-10 71.2 185 28.6
RcHm_v2.0_Chr5g0012821 Rosa chinensis HOM05D002606 ORTHO05D003016 1.4e-10 71.2 182 30.2
Manes.17G062800 Manihot esculenta HOM05D002606 ORTHO05D003016 1.8e-10 70.9 180 28.9
Aqoxy4G00175 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 2.3e-10 70.5 203 30.5
Hma1.2p1_0015F.1_g010570 Hydrangea macrophylla HOM05D002606 ORTHO05D003016 2.3e-10 70.5 180 29.4
GSVIVG01021316001 Vitis vinifera HOM05D002606 ORTHO05D003016 2.3e-10 70.5 180 28.9
Eucgr.D00356 Eucalyptus grandis HOM05D002606 ORTHO05D003016 3.0e-10 70.1 180 28.9
FvH4_3g06460 Fragaria vesca HOM05D002606 ORTHO05D003016 3.0e-10 70.1 182 29.1
FAN11G1742 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.0e-10 70.1 182 29.1
FAN25G0150 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.0e-10 70.1 182 29.1
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 3.0e-10 70.1 202 25.2
CSS0035276 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 4.0e-10 69.7 180 30.0
Carub.0001s2785 Capsella rubella HOM05D002606 ORTHO05D003016 4.0e-10 69.7 200 28.0
CAN.G257.100 Capsicum annuum HOM05D002606 ORTHO05D003016 4.0e-10 69.7 199 29.6
Eucgr.B01335 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.0e-10 69.7 193 30.1
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.0e-10 69.7 171 31.6
Sed0008006 Sechium edule HOM05D002606 ORTHO05D003016 4.0e-10 69.7 180 31.1
Atru.chr10.1471 Acer truncatum HOM05D002606 ORTHO05D003016 5.2e-10 69.3 180 30.0
AL1G43460 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 5.2e-10 69.3 180 28.3
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 5.2e-10 69.3 202 27.2
Eucgr.B01336 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.2e-10 69.3 218 27.1
Gohir.D10G033300 Gossypium hirsutum HOM05D002606 ORTHO05D003016 5.2e-10 69.3 200 28.5
Gorai.011G035100 Gossypium raimondii HOM05D002606 ORTHO05D003016 5.2e-10 69.3 200 28.5
Prupe.4G072200 Prunus persica HOM05D002606 ORTHO05D003016 5.2e-10 69.3 182 29.1
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 5.2e-10 69.3 200 27.0
FAN21G3713 Fragaria x ananassa HOM05D002606 ORTHO05D003016 6.8e-10 68.9 182 29.1
Glyma.05G163700 Glycine max HOM05D002606 ORTHO05D003016 6.8e-10 68.9 180 28.9
Gohir.A10G032600 Gossypium hirsutum HOM05D002606 ORTHO05D003016 8.9e-10 68.6 200 28.5
Lj1A1180T81 Lonicera japonica HOM05D002606 ORTHO05D003016 8.9e-10 68.6 201 28.9
Sopen02g020560 Solanum pennellii HOM05D002606 ORTHO05D003016 8.9e-10 68.6 200 28.0
vmacro03988 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 8.9e-10 68.6 180 28.9
Solyc02g071530.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 1.2e-09 68.2 200 28.5
PGSC0003DMG400007247 Solanum tuberosum HOM05D002606 ORTHO05D003016 1.2e-09 68.2 200 28.5
A07p10450 Brassica napus HOM05D002606 ORTHO05D003016 1.5e-09 67.8 200 28.0
Haze_05456 Corylus avellana HOM05D002606 ORTHO05D003016 1.5e-09 67.8 203 28.1
MELO3C002697.2 Cucumis melo HOM05D002606 ORTHO05D003016 1.5e-09 67.8 205 29.8
QL03p011251 Quercus lobata HOM05D003868 ORTHO05D005364 1.5e-09 67.8 217 28.1
TPR.G6726 Trifolium pratense HOM05D002606 ORTHO05D003016 1.5e-09 67.8 180 27.2
Actinidia19476 Actinidia chinensis HOM05D002606 ORTHO05D003016 2.0e-09 67.4 180 28.3
Ah.14g086800 Amaranthus hybridus HOM05D002606 ORTHO05D003016 2.0e-09 67.4 181 30.9
AT1G29630 Arabidopsis thaliana HOM05D002606 ORTHO05D003016 2.0e-09 67.4 200 28.0
EL10Ac8g19815 Beta vulgaris HOM05D002606 ORTHO05D003016 2.0e-09 67.4 200 29.0
Cfa001058 Carpinus fangiana HOM05D002606 ORTHO05D003016 2.0e-09 67.4 203 28.1
CsaV3_1G032850 Cucumis sativus L. HOM05D002606 ORTHO05D003016 2.0e-09 67.4 180 30.6
Thhalv10006968m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 2.0e-09 67.4 200 27.5
Nn3g20963 Nelumbo nucifera HOM05D002606 ORTHO05D003016 2.0e-09 67.4 180 30.0
Nitab4.5_0003746g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 2.0e-09 67.4 180 30.0
BcaB03g13871 Brassica carinata HOM05D002606 ORTHO05D003016 2.6e-09 67.0 200 27.5
ClCG03G007250 Citrullus lanatus HOM05D002606 ORTHO05D003016 2.6e-09 67.0 180 29.4
ECA236G2241 Erigeron canadensis HOM05D002606 ORTHO05D003016 2.6e-09 67.0 181 30.4
Glyma.08G120900 Glycine max HOM05D002606 ORTHO05D003016 2.6e-09 67.0 180 28.3
Medtr8g087940 Medicago truncatula HOM05D002606 ORTHO05D003016 2.6e-09 67.0 180 28.3
Sp1g25530 Schrenkiella parvula HOM05D002606 ORTHO05D003016 2.6e-09 67.0 200 29.0
Sc24g0001920 Simmondsia chinensis HOM05D002606 ORTHO05D003016 2.6e-09 67.0 180 28.9
HPP92_017311 Vanilla planifolia HOM05D003868 ORTHO05D005364 2.6e-09 67.0 176 28.4
BcaC06g35445 Brassica carinata HOM05D002606 ORTHO05D003016 3.4e-09 66.6 200 27.5
C07p16090 Brassica napus HOM05D002606 ORTHO05D003016 3.4e-09 66.6 200 27.5
BolC7t42094H Brassica oleracea HOM05D002606 ORTHO05D003016 3.4e-09 66.6 200 27.5
BraA07t28845Z Brassica rapa HOM05D002606 ORTHO05D003016 3.4e-09 66.6 200 27.5
Ca_17874_v3 Cicer arietinum L. HOM05D002606 ORTHO05D003016 3.4e-09 66.6 180 27.2
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.4e-09 66.6 187 29.4
Cc09_g09990 Coffea canephora HOM05D002606 ORTHO05D003016 4.4e-09 66.2 180 28.3
Haze_06043 Corylus avellana HOM05D002606 ORTHO05D003016 4.4e-09 66.2 203 28.1
FAN16G3491 Fragaria x ananassa HOM05D002606 ORTHO05D003016 4.4e-09 66.2 182 28.6
Aa31LG6G6030 Aethionema arabicum HOM05D002606 ORTHO05D003016 5.7e-09 65.9 203 26.6
QL05p052775 Quercus lobata HOM05D002606 ORTHO05D003016 5.7e-09 65.9 199 27.1
SGA_v2.0_scaffold1G00119 Striga asiatica HOM05D002606 ORTHO05D003016 5.7e-09 65.9 180 28.3
TWI09G1585 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 5.7e-09 65.9 180 27.8
Lsat_1_v5_gn_7_26381 Lactuca sativa HOM05D002606 ORTHO05D003016 7.5e-09 65.5 180 29.4
HanXRQChr04g0115561 Helianthus annuus HOM05D002606 ORTHO05D003016 9.8e-09 65.1 206 28.6
PSO541G3031 Papaver somniferum HOM05D002606 ORTHO05D003016 1.3e-08 64.7 180 30.6
MSTRG.16192 Avicennia marina HOM05D002606 ORTHO05D003016 1.7e-08 64.3 180 28.9
Psat7g066200 Pisum sativum HOM05D002606 ORTHO05D003016 1.7e-08 64.3 180 27.2
CiPaw.09G132100 Carya illinoinensis HOM05D002606 ORTHO05D003016 2.2e-08 63.9 199 28.1
AUR62035823 Chenopodium quinoa HOM05D002606 ORTHO05D003016 2.2e-08 63.9 183 29.5
AUR62027619 Chenopodium quinoa HOM05D002606 ORTHO05D003016 2.9e-08 63.5 182 28.6
Migut.M00971 Erythranthe guttata HOM05D002606 ORTHO05D003016 2.9e-08 63.5 180 28.9
Ciclev10014561m.g Citrus clementina HOM05D002606 ORTHO05D003016 3.7e-08 63.2 180 27.2
Oeu001059.1 Olea europaea HOM05D002606 ORTHO05D003016 3.7e-08 63.2 182 27.5
Zm00001eb151620 Zea mays HOM05D002606 ORTHO05D003016 3.7e-08 63.2 213 26.8
arahy.Tifrunner.gnm1.ann1.0CW7N2 Arachis hypogaea HOM05D002606 ORTHO05D003016 4.9e-08 62.8 180 28.3
arahy.Tifrunner.gnm1.ann1.CS3QBI Arachis hypogaea HOM05D002606 ORTHO05D003016 4.9e-08 62.8 180 28.3
Cre07.g353950 Chlamydomonas reinhardtii HOM05D002606 ORTHO05D003016 4.9e-08 62.8 181 28.7
Lj4g0026804 Lotus japonicus HOM05D002606 ORTHO05D003016 4.9e-08 62.8 180 26.7
Peaxi162Scf00308g00815 Petunia axillaris HOM05D002606 ORTHO05D003016 4.9e-08 62.8 180 28.3
Potri.011G077001 Populus trichocarpa HOM05D002606 ORTHO05D003016 6.4e-08 62.4 180 26.7
Lalb_Chr12g0204831 Lupinus albus HOM05D002606 ORTHO05D003016 8.3e-08 62.0 184 28.8
Phvul.002G243800 Phaseolus vulgaris HOM05D002606 ORTHO05D003016 8.3e-08 62.0 180 26.7
MCO07G337 Micromonas commoda HOM05D003868 ORTHO05D005364 1.4e-07 61.2 198 25.8
DCAR_003956 Daucus carota HOM05D002606 ORTHO05D003016 1.8e-07 60.8 200 25.0
HPP92_017792 Vanilla planifolia HOM05D002606 ORTHO05D003016 2.4e-07 60.5 180 28.3
Cfa001740 Carpinus fangiana HOM05D002606 ORTHO05D003016 5.4e-07 59.3 203 26.6
Cre03.g145687 Chlamydomonas reinhardtii HOM05D003868 ORTHO05D005364 7.0e-07 58.9 211 26.1
Migut.F00351 Erythranthe guttata HOM05D007457 ORTHO05D009435 7.0e-07 58.9 232 24.6
PSO675G2539 Papaver somniferum HOM05D002606 ORTHO05D003016 7.0e-07 58.9 179 29.6
Os01g0777300 Oryza sativa ssp. japonica HOM05D002606 ORTHO05D003016 9.2e-07 58.5 213 26.8
SalBow8G0847 Salvia bowleyana HOM05D002606 ORTHO05D003016 9.2e-07 58.5 148 29.1
SMO174G0195 Selaginella moellendorffii HOM05D002606 ORTHO05D003016 1.6e-06 57.8 203 27.1
ATR0763G174 Amborella trichopoda HOM05D002606 ORTHO05D003016 2.7e-06 57.0 162 29.0
Cpa.g.sc17.163 Carica papaya HOM05D002606 ORTHO05D003016 2.7e-06 57.0 155 28.4
Haze_06048 Corylus avellana HOM05D002606 ORTHO05D003016 2.7e-06 57.0 154 27.9
Eucgr.B01346 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.7e-06 57.0 162 29.6
unitig_21.g20499 Utricularia gibba HOM05D005583 ORTHO05D006507 4.6e-06 56.2 105 31.4


User provided reference genes

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