Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.0e-125 451.1 217 100.0
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.2e-120 433.7 217 95.9
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-114 416.8 217 92.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.0e-106 388.7 202 91.6
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.1e-95 351.7 217 78.8
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-90 336.7 207 81.6
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.8e-90 334.3 217 77.4
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.9e-82 307.4 204 72.5
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-81 307.0 217 71.9
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.1e-79 298.5 198 72.7
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-78 297.0 217 70.5
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.3e-76 288.9 178 79.8
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 3.9e-69 265.4 217 64.5
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 6.6e-53 211.5 187 58.8
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 4.0e-42 175.6 198 48.0
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 5.3e-42 175.3 198 48.0
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 6.9e-42 174.9 198 47.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.9e-42 174.9 197 47.2
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 9.0e-42 174.5 205 46.3
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 9.0e-42 174.5 198 47.0
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.5e-41 173.7 194 46.4
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.6e-41 172.9 188 50.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 3.4e-41 172.6 197 47.2
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 3.4e-41 172.6 214 46.3
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 4.5e-41 172.2 188 50.0
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 7.6e-41 171.4 215 41.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.3e-40 170.6 213 43.7
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.3e-40 170.6 197 46.2
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.7e-40 170.2 228 41.7
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 1.7e-40 170.2 199 44.2
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.7e-40 170.2 224 42.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.2e-40 169.9 213 43.2
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.9e-40 169.5 188 48.4
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.9e-40 169.5 199 46.2
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 2.9e-40 169.5 213 42.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.9e-40 169.5 188 48.4
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-40 169.5 204 44.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.8e-40 169.1 188 48.9
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 3.8e-40 169.1 204 44.6
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 3.8e-40 169.1 188 48.4
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 3.8e-40 169.1 197 44.7
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 4.9e-40 168.7 188 48.9
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 6.4e-40 168.3 207 45.9
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 6.4e-40 168.3 207 45.9
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 6.4e-40 168.3 188 47.9
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.4e-40 168.3 187 48.1
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 8.4e-40 167.9 188 47.3
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 8.4e-40 167.9 219 41.1
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 8.4e-40 167.9 197 44.2
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 8.4e-40 167.9 197 44.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 8.4e-40 167.9 197 44.2
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.1e-39 167.5 188 48.4
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.1e-39 167.5 198 46.0
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.1e-39 167.5 188 49.5
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.1e-39 167.5 199 45.7
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.4e-39 167.2 197 46.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.4e-39 167.2 190 47.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.4e-39 167.2 188 47.9
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.9e-39 166.8 188 48.4
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.9e-39 166.8 185 47.0
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.9e-39 166.8 204 44.6
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 2.4e-39 166.4 197 44.2
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.4e-39 166.4 191 47.1
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.4e-39 166.4 188 48.4
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.4e-39 166.4 188 48.4
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.2e-39 166.0 197 44.2
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 4.2e-39 165.6 222 43.2
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.2e-39 165.6 222 43.7
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 4.2e-39 165.6 191 46.6
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 4.2e-39 165.6 190 45.3
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.2e-39 165.6 203 42.4
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.5e-39 165.2 222 42.3
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 5.5e-39 165.2 188 48.4
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 5.5e-39 165.2 197 46.2
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 5.5e-39 165.2 197 46.2
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 5.5e-39 165.2 188 48.4
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 5.5e-39 165.2 197 46.2
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 5.5e-39 165.2 188 48.4
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 5.5e-39 165.2 180 47.8
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 7.1e-39 164.9 188 48.4
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 7.1e-39 164.9 197 42.6
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 7.1e-39 164.9 198 45.5
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.2e-38 164.1 188 47.9
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.2e-38 164.1 210 44.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.2e-38 164.1 188 46.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.2e-38 164.1 207 42.5
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 1.2e-38 164.1 93 88.2
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.6e-38 163.7 188 47.9
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.6e-38 163.7 213 42.7
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 3.5e-38 162.5 188 47.3
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 6.0e-38 161.8 188 46.8
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 6.0e-38 161.8 188 48.4
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 7.9e-38 161.4 188 46.8
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 7.9e-38 161.4 180 44.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-37 160.2 114 70.2
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.8e-37 160.2 180 45.0
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.3e-37 159.8 220 42.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 8.7e-37 157.9 190 45.8
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.1e-36 157.5 201 44.3
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.5e-36 156.4 238 39.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 4.3e-36 155.6 210 42.9
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.3e-36 155.6 176 46.6
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 9.6e-36 154.5 218 42.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.3e-35 154.1 169 48.5
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.3e-35 154.1 177 45.8
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.1e-35 151.4 198 43.9
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.1e-34 151.0 188 46.3
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.1e-34 151.0 203 41.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 2.4e-34 149.8 174 45.4
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.4e-34 149.8 165 48.5
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 3.1e-34 149.4 165 48.5
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 5.3e-34 148.7 200 43.0
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 5.3e-34 148.7 176 45.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.3e-34 148.7 235 38.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 6.9e-34 148.3 170 46.5
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.2e-33 147.5 169 44.4
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.5e-33 147.1 174 42.5
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-33 146.7 182 42.9
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 3.4e-33 146.0 240 37.5
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.4e-33 146.0 174 42.5
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.3e-32 144.1 165 47.9
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 3.8e-32 142.5 187 40.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 6.5e-32 141.7 160 46.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.4e-32 141.4 167 44.9
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 1.4e-31 140.6 107 65.4
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.3e-29 134.0 188 43.1
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.7e-29 131.3 176 40.3
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.9e-28 130.2 192 38.0
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.1e-27 126.7 133 48.1
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.8e-26 123.6 242 36.4
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.3e-26 122.1 176 39.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.9e-24 116.3 136 44.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 2.9e-24 116.3 148 41.9
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 9.3e-23 111.3 129 46.5
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.2e-22 110.9 121 47.1
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 2.1e-22 110.2 52 96.2
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 5.1e-21 105.5 170 38.8
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 6.3e-19 98.6 100 48.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.0e-16 91.3 97 47.4
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.8e-13 80.5 95 48.4
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 3.9e-13 79.3 80 48.8
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 5.1e-13 79.0 83 48.2
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 5.1e-13 79.0 95 46.3
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.0e-12 77.0 91 42.9
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 4.4e-12 75.9 90 44.4
Pp3c11_8200 Physcomitrium patens HOM05D004663 ORTHO05D308975 1.8e-10 70.5 33 90.9
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 4.1e-10 69.3 39 79.5
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-09 67.8 188 29.3
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.4e-09 66.2 83 41.0
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 8.5e-08 61.6 83 38.6
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 6.1e-06 55.5 60 46.7


User provided reference genes

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