Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.9e-196 686.8 358 100.0
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 2.4e-108 396.4 367 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.7e-106 390.2 278 65.5
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.9e-106 389.4 279 65.9
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 1.1e-105 387.5 357 55.7
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 9.4e-105 384.4 269 68.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.1e-104 383.3 358 55.9
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 4.0e-103 379.0 277 67.1
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.2e-101 373.2 288 63.2
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.8e-101 372.9 288 63.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.7e-101 372.5 283 64.0
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 4.8e-101 372.1 267 66.3
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 6.3e-101 371.7 275 65.1
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 6.3e-101 371.7 275 65.1
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 6.3e-101 371.7 270 66.3
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 6.3e-101 371.7 267 65.9
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 8.3e-101 371.3 268 66.0
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.1e-100 370.9 266 66.2
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 4.1e-100 369.0 283 64.0
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 9.1e-100 367.9 273 64.5
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.0e-99 366.7 265 66.4
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 3.5e-99 365.9 268 65.7
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 3.5e-99 365.9 276 65.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 4.5e-99 365.5 268 64.2
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.0e-98 364.4 277 65.0
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.7e-98 363.6 278 65.1
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.3e-98 363.2 267 65.9
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 3.8e-98 362.5 273 63.0
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 5.0e-98 362.1 281 61.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 6.5e-98 361.7 268 65.7
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 8.6e-98 361.3 294 60.2
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.6e-98 361.3 364 52.7
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 1.9e-97 360.1 362 53.6
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.9e-97 360.1 280 63.6
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.9e-97 360.1 283 60.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.5e-97 359.8 289 62.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.3e-97 359.4 279 64.2
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 3.3e-97 359.4 275 62.9
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 5.5e-97 358.6 281 64.1
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 7.2e-97 358.2 368 52.7
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 7.2e-97 358.2 281 60.9
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.5e-97 357.8 287 61.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 9.5e-97 357.8 292 59.9
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 9.5e-97 357.8 281 60.9
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.2e-96 357.5 268 65.3
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.2e-96 357.5 280 63.2
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.2e-96 357.5 288 61.8
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.6e-96 357.1 287 61.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.1e-96 356.7 265 65.7
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.1e-96 356.7 317 57.1
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 4.7e-96 355.5 275 63.6
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 6.1e-96 355.1 267 64.8
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 8.0e-96 354.8 269 63.9
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.0e-95 354.4 268 64.2
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.8e-95 353.6 363 52.3
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 4.0e-95 352.4 359 55.2
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 6.8e-95 351.7 359 54.6
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 8.9e-95 351.3 278 60.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 8.9e-95 351.3 359 54.0
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.5e-94 350.5 279 62.4
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.0e-94 350.1 269 64.3
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.6e-94 349.7 336 55.4
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 5.7e-94 348.6 252 65.5
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-93 347.4 269 63.9
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-93 347.4 269 63.9
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-93 347.4 269 63.9
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.3e-93 347.4 269 63.6
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.7e-93 347.1 251 66.5
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 2.2e-93 346.7 231 68.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 2.2e-93 346.7 268 63.1
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.8e-93 346.3 269 63.6
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.8e-93 346.3 269 63.2
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 4.9e-93 345.5 298 58.7
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 8.3e-93 344.7 269 63.6
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 8.3e-93 344.7 311 56.9
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.4e-92 343.2 269 63.2
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 4.1e-92 342.4 269 62.1
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.4e-92 342.0 269 62.1
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.4e-92 342.0 283 61.5
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.2e-92 341.3 277 62.1
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 2.0e-91 340.1 270 61.9
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 4.5e-91 339.0 361 52.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.0e-90 337.8 264 62.5
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.0e-90 337.8 264 62.5
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.0e-90 337.8 264 62.5
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.7e-90 337.0 252 64.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 5.6e-89 332.0 241 67.6
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 7.3e-89 331.6 239 66.5
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 9.5e-89 331.3 264 62.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.2e-88 330.9 243 64.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 2.1e-88 330.1 344 50.6
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.8e-88 329.7 252 63.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.1e-88 328.6 257 63.4
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 6.1e-88 328.6 257 63.0
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.8e-87 327.0 261 62.5
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.3e-87 326.6 268 60.8
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.3e-87 326.6 285 57.9
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.0e-87 326.2 245 64.9
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 5.2e-87 325.5 252 63.1
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.0e-86 323.6 271 60.5
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.7e-85 319.3 211 70.6
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.6e-83 313.9 209 70.8
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 3.9e-82 309.3 255 60.4
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 6.2e-80 302.0 254 57.1
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.3e-79 300.1 227 60.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 2.3e-79 300.1 270 56.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 9.8e-78 294.7 209 67.5
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.7e-75 286.6 285 49.8
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 4.7e-72 275.8 231 60.2
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 8.1e-72 275.0 318 48.7
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.8e-71 273.9 319 48.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 2.3e-71 273.5 228 59.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.5e-70 270.8 282 48.6
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 7.5e-70 268.5 323 47.4
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 5.1e-66 255.8 283 48.1
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.7e-61 240.7 215 52.1
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.4e-55 220.3 180 57.8
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 4.4e-54 216.1 191 58.1
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 5.4e-52 209.1 220 48.2
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 6.0e-51 205.7 166 62.0
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 6.6e-50 202.2 162 59.3
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.3e-48 198.0 180 55.0
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.3e-40 171.4 204 44.6
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.8e-40 170.2 231 45.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.8e-40 169.5 204 44.1
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-38 162.5 204 42.6
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.9e-38 161.8 204 43.1
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 8.4e-37 158.7 99 71.7
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 5.5e-36 156.0 100 70.0
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.6e-35 154.5 197 44.7
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.6e-35 152.9 85 80.0
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 6.0e-35 152.5 108 65.7
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.6e-33 146.0 204 40.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.6e-33 146.0 183 43.2
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 3.4e-30 136.7 98 67.3
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-27 127.9 204 35.8
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.5e-27 126.7 200 35.5
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.5e-27 126.7 200 35.5
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 3.9e-26 123.2 77 70.1
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-25 121.3 204 34.8
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-24 118.2 180 38.3
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 9.0e-23 112.1 311 33.4
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-21 107.5 204 32.4
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.4e-20 104.8 96 60.4
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.9e-20 104.4 86 52.3
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.8e-18 97.8 161 37.9
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.0e-17 94.4 180 33.3
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 2.9e-13 80.5 204 28.9
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.0e-10 70.5 110 35.5
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.3e-07 59.7 42 61.9
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 4.5e-06 56.6 78 38.5


User provided reference genes

Program Settings