Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 0.0e+00 1075.5 529 100.0
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 1.6e-145 520.4 514 52.3
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 5.8e-135 485.3 458 51.5
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.3e-134 484.2 460 52.8
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 9.6e-130 468.0 422 51.9
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 2.8e-129 466.5 421 52.5
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.8e-128 463.8 422 52.4
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.4e-128 463.4 420 52.9
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 1.2e-127 461.1 448 50.7
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.2e-127 461.1 424 53.5
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 2.0e-127 460.3 424 52.4
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 9.9e-127 458.0 424 50.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 1.3e-126 457.6 422 51.4
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 2.2e-126 456.8 444 50.5
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 3.8e-126 456.1 454 48.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.9e-126 455.7 444 49.5
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 4.9e-126 455.7 437 51.0
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 8.4e-126 454.9 422 52.1
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.4e-125 454.1 446 49.8
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 1.4e-125 454.1 425 50.8
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 3.2e-125 453.0 461 49.0
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 4.2e-125 452.6 420 50.5
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 4.2e-125 452.6 419 50.4
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 5.4e-125 452.2 456 48.5
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 7.1e-125 451.8 420 51.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.2e-124 451.1 419 52.5
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 2.1e-124 450.3 447 49.2
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 3.5e-124 449.5 469 48.4
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 4.6e-124 449.1 420 51.2
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.6e-124 449.1 422 51.4
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 6.0e-124 448.7 442 49.5
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 6.0e-124 448.7 451 48.8
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 6.0e-124 448.7 459 48.4
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 7.9e-124 448.4 469 48.2
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.0e-123 448.0 423 51.3
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 1.0e-123 448.0 451 48.6
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.0e-123 448.0 437 50.1
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.3e-123 447.6 469 48.2
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.3e-123 447.6 449 49.2
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 2.3e-123 446.8 473 48.4
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 3.0e-123 446.4 474 46.8
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 3.0e-123 446.4 421 51.5
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 3.0e-123 446.4 435 50.1
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 3.9e-123 446.0 433 49.9
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 5.1e-123 445.7 421 49.4
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 6.7e-123 445.3 418 51.2
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 8.7e-123 444.9 422 49.5
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 1.5e-122 444.1 457 48.1
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 1.5e-122 444.1 420 51.0
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.9e-122 443.7 514 44.7
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 2.5e-122 443.4 471 48.0
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 2.5e-122 443.4 471 48.0
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 2.5e-122 443.4 454 49.8
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 2.5e-122 443.4 419 50.6
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 3.3e-122 443.0 462 48.1
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 4.3e-122 442.6 461 47.9
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 4.3e-122 442.6 419 50.6
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 5.6e-122 442.2 419 51.1
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 7.4e-122 441.8 420 50.7
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 2.8e-121 439.9 419 51.6
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 2.8e-121 439.9 461 47.7
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 2.8e-121 439.9 442 48.9
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 8.1e-121 438.3 439 48.1
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.1e-120 438.0 420 48.6
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.4e-120 437.6 461 46.9
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 4.0e-120 436.0 447 48.3
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 5.3e-120 435.6 420 49.8
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 5.3e-120 435.6 433 49.2
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 6.9e-120 435.3 419 49.9
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.2e-119 434.5 461 46.4
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.2e-119 434.5 420 50.5
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.5e-119 434.1 424 49.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 4.5e-119 432.6 442 49.1
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 4.5e-119 432.6 445 48.3
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 5.8e-119 432.2 429 46.9
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.9e-118 429.9 425 48.9
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 4.9e-118 429.1 428 48.6
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 6.4e-118 428.7 422 49.3
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.1e-117 427.9 425 49.4
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 3.5e-116 422.9 429 51.3
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 6.0e-116 422.2 415 50.1
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.3e-113 414.5 379 53.0
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 4.8e-113 412.5 445 46.5
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 3.1e-112 409.8 444 47.5
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 5.5e-109 399.1 418 46.9
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 3.5e-108 396.4 386 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 4.3e-106 389.4 396 49.2
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.0e-102 378.3 377 49.3
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 5.5e-101 372.5 436 43.3
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 6.1e-100 369.0 375 49.6
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 3.1e-96 356.7 339 50.7
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 3.4e-95 353.2 382 48.2
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 2.5e-93 347.1 434 44.0
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.4e-91 341.3 319 51.7
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.0e-86 325.1 330 46.7
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 1.8e-83 314.3 389 43.2
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 4.4e-82 309.7 363 46.0
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.8e-67 261.2 255 49.4
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 3.7e-65 253.4 249 51.4
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 1.4e-64 251.5 254 50.8
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.5e-61 241.5 225 52.4
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.7e-57 226.9 319 40.1
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 9.2e-56 222.2 296 40.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.2e-55 221.9 243 43.6
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 5.0e-54 216.5 176 58.5
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 9.8e-50 202.2 208 46.2
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 1.3e-46 191.8 204 50.0
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.9e-45 188.0 260 39.6
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 1.2e-44 185.3 237 43.9
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.7e-33 147.1 128 51.6
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 1.4e-32 145.2 126 51.6
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 7.1e-32 142.9 165 43.6
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 9.5e-29 132.5 105 56.2
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 1.7e-17 95.1 107 46.7
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 8.4e-17 92.8 114 41.2
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 8.7e-14 82.8 99 41.4


User provided reference genes

Program Settings